Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00532 ATGATGATGAATTCATTTGAAGAAATGCTTGATAAGTTTGAGATGGACATGCAATCTATGTCATCAGCCTACTCTGAAACCAAACCACCACCACATCAACTTCAATCCCCTTTTAACACTGCCATGCCTTCTAGATCCGCCTCTCCATCACCACCCAAACTTATCTCCTTTGAGGCACCGTCTCTTCCTAATTCTTCCAACATTAAGAACCCTAATCTCATGATGGACGACCACATTCACTTCTCTGCTTTCTTCAACCATGATAATCCACCGCATAAGGTCCTTCCCGCCACAGCTAGGAACCCAATCCAAGCTCAGGAGCATGTAATCGCCGAAAGAAAACGCCGGGAAAAGCTCAGCCAGAGGTTCGTCGCTCTTTCCGCCATGGTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAATTTTAGGAGATGCCATAAAATATGTGAAGCAACTACAGGAACGAGTGCAGTTTTTGGAGGAGGAGAAGGCTAGAAAGAAAACTATGGTTGAATCAGGGGTGGCAGTAAAGAGATGTTTCGTGTTTGTTGAAGATGAAGATAATAATGAGAACGAAATTTCAGCAGCAGCAGCATTATTGGATGGAAATTGTAATACACTTCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACGTACTCATCAGAATCCACTGCCATAAACAAGAGTGCAAGAACAGTAGGGGTGCTCGTGAGGCTGCAATACTCTCCGTATTAGAGAAGCATAATCTCACTGTTCACACAACCACCTCTTTGCCCTTCGGCAATGACACTCTCGATATCACTATTCTCGCTCAGATGAAGAAGGAATGCTCCATTAGGACAAAGGATCTAGTAGGAAGCCTACGGGTGGCATTGACACAATTCAGTTGA 891 0.4444 MMMNSFEEMLDKFEMDMQSMSSAYSETKPPPHQLQSPFNTAMPSRSASPSPPKLISFEAPSLPNSSNIKNPNLMMDDHIHFSAFFNHDNPPHKVLPATARNPIQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQERVQFLEEEKARKKTMVESGVAVKRCFVFVEDEDNNENEISAAAALLDGNCNTLPEIKARVSGKDVLIRIHCHKQECKNSRGAREAAILSVLEKHNLTVHTTTSLPFGNDTLDITILAQMKKECSIRTKDLVGSLRVALTQFS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00532 296 Gene3D - 104 177 IPR036638 GO:0046983
Adu05g00532 296 MobiDBLite consensus disorder prediction 20 51 - -
Adu05g00532 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Adu05g00532 296 PANTHER TRANSCRIPTION FACTOR NAI1 18 295 - -
Adu05g00532 296 CDD bHLH_AtNAI1_like 105 177 - -
Adu05g00532 296 Coils Coil 142 169 - -
Adu05g00532 296 PANTHER BHLH TRANSCRIPTION FACTOR 18 295 - -
Adu05g00532 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 167 IPR036638 GO:0046983
Adu05g00532 296 SMART finulus 109 158 IPR011598 GO:0046983
Adu05g00532 296 Pfam Helix-loop-helix DNA-binding domain 106 153 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00532 Adu-Chr5 5657098 5658754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00532 99 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.485 6.22e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g00532 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00532 - - aip:107642660 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00532 05 5657098 5658754 Adu05g00532 05 5657098 5658754 ECH
Adu05g00532 05 5657098 5658754 Adu01g01200 01 23995213 23997955 PCT