Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00531 ATGATTTCCACCGAGGAATCATGGACTACTTGGCTCTGTGATTTGGAAGAAGAGGACTACAGTTTCATCAATGGCATAATAGCAGCCCCTAATAATTACTCAAACTCACAGATGAGTAACAATGATAATGAGAGGCCATCCAAGCTTCTCAAGAGCACCACCCCAACCCCAAGACGCAGAAGAACTACTGGCTCAGCTGGCACTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATTAGCCAACAGTTCATAGCACTTTCTGCCCTTATTCCAGGCCTCAAAAAGATGGACAAGGCGACGGTGTTAGGCGACGCTATCAAGTACGTGAAGCAGCTACAAGAGCAAGTGAAGGTTCTAGAAACTGAAAGCAAAAGGAAAAGCGCGGAGTCTGTTGTGTATGTTGAGAAATCTGAGGTGTGCGGAGAGGAAGATGTGTCTGTGTCAGACACTTGGTCAAATTCAGGGGGGGATGGAAACTCATCGTACGAAGTGTCAAAAGCAGTGAGTAGGTCGGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATCCGGATCCACTGCGAGAAACACAAAGGAGTGTTGATGCACATTCTCAAGCTCATTGACAAACTCCATCTCTCTGTTCTTAACACCACTTCCTTGCCTTTTGGAGCCTCCATCGTCGACATAACCATCACTGCCGAGGTACATTAA 735 0.4748 MISTEESWTTWLCDLEEEDYSFINGIIAAPNNYSNSQMSNNDNERPSKLLKSTTPTPRRRRTTGSAGTGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQEQVKVLETESKRKSAESVVYVEKSEVCGEEDVSVSDTWSNSGGDGNSSYEVSKAVSRSVLPEVEARVSEKNVLIRIHCEKHKGVLMHILKLIDKLHLSVLNTTSLPFGASIVDITITAEVH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00531 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 139 IPR036638 GO:0046983
Adu05g00531 244 SMART finulus 79 128 IPR011598 GO:0046983
Adu05g00531 244 CDD bHLH_AtNAI1_like 74 147 - -
Adu05g00531 244 PANTHER BHLH TRANSCRIPTION FACTOR 59 243 - -
Adu05g00531 244 PANTHER BHLH TRANSCRIPTION FACTOR 3 41 - -
Adu05g00531 244 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Adu05g00531 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Adu05g00531 244 Coils Coil 112 139 - -
Adu05g00531 244 MobiDBLite consensus disorder prediction 33 70 - -
Adu05g00531 244 MobiDBLite consensus disorder prediction 33 76 - -
Adu05g00531 244 Gene3D - 72 142 IPR036638 GO:0046983
Adu05g00531 244 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 59 243 - -
Adu05g00531 244 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00531 Adu-Chr5 5650531 5652093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00531 59 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.739 3.85e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g00531 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00531 - - ahf:112748090 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00531 05 5650531 5652093 Adu01g01206 01 24284138 24286654 PCT