Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00524 ATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCTGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCGGTCGCAGCAACCAACTGCTTCTTCTCCCAAGAAGCGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAATGAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTCCATCTGCCTTGCAGGAGCTGAAGAAGCGCGTTCCGCAGCTGACGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTCTGGAGCCTGGCAGAATCAAGATGACAGATATTGCGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTGGCGAAGAGGCTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCCATTATTAAGGCACTTGCTGAGGCAACTGGAAGAACTGAATCCAAAATCAAGAAGCTGATGAATGTTTTCTTGTTGTTTGTTCTTGGCAGGACGAGGTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAATGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTAAATATCTTATCCGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGTATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTATTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACACATGGTGTATGGAAACTTCCATCAACGTGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCGAGGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGCAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGCAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATAATCGTGAGAAACAGACCATCCGTCCTTTCCAGGATCTTAGTACTCGGCCTCATAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACACTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGATCAAGCTGTGAGGGATTAATCATTAAAACTTTAAATGAAGATTCTACATATGAACCTTCCAATCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCGATGGATTTGGTACCTATAGCTGCATTCCACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGTAGGAACGGGATTTACTGAAGAAGTGCTCGAAGAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCGATATGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGCGAGGTATGGGAGGTGAAAGCTGCAGATTTGACCATCAGCCCAGTTCACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATTATCTGAGCAGGTTGCTGAGATGTATAATGTTCAAAAAGCCACTCAAACTAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAACAACCAAACAGGATGGTAGTGAGTCACCAAAAAAACAGATTTGCAGCGAAGACGAAGATGAAGACGAAGACGAAGTCGCAGATGAAGATGTAGATGTAGATGTAATGCATATGAAGATGAAGATAAGTGAGCTGCTGTCATACACTATTGTACCAATAGAATCTCAGCATTTTTGCTGA 2310 0.4364 MTKPPSAFDALMSGARAAAAAAAAAKKKKSERSQQPTASSPKKRKPSSSTLPTPTSTLNPNEEPEKEGPPPTKTRHVSSPSALQELKKRVPQLTAKPSKFDPSSVACWEKGTPVPFSLLALALDMISLEPGRIKMTDIACNLMKTVIYSTPEDLVPLIYLLAKRLAPAHEGLELGIGETSIIKALAEATGRTESKIKKLMNVFLLFVLGRTRFRLIAKESGRDSQMKKKNHIKALLVAATDCEPKYLIRFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPRKGISDILNSLQDVQFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISSRLKKSTVSSFVLDCEIVGYNREKQTIRPFQDLSTRPHKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDTEEIQKFLDKAVGSSCEGLIIKTLNEDSTYEPSNRSNNWLKLKKDYLDNIGDSMDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIVGTGFTEEVLEERSKSLGSQVIPGPKRYYRYGDKMKPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASLSEQVAEMYNVQKATQTKEKEKEKEKETTKQDGSESPKKQICSEDEDEDEDEVADEDVDVDVMHMKMKISELLSYTIVPIESQHFC 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00524 769 Pfam ATP dependent DNA ligase domain 335 540 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu05g00524 769 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 215 692 IPR000977 GO:0003910|GO:0005524|GO:0071897
Adu05g00524 769 Pfam ATP dependent DNA ligase C terminal region 565 677 IPR012309 GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 MobiDBLite consensus disorder prediction 697 726 - -
Adu05g00524 769 ProSitePatterns ATP-dependent DNA ligase signature 2. 514 540 IPR016059 GO:0003909
Adu05g00524 769 SUPERFAMILY Nucleic acid-binding proteins 548 695 IPR012340 -
Adu05g00524 769 CDD OBF_DNA_ligase_I 548 693 - -
Adu05g00524 769 MobiDBLite consensus disorder prediction 34 62 - -
Adu05g00524 769 MobiDBLite consensus disorder prediction 1 85 - -
Adu05g00524 769 Pfam DNA ligase N terminus 213 268 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 Pfam DNA ligase N terminus 115 199 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 359 367 IPR016059 GO:0003909
Adu05g00524 769 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 26 200 - -
Adu05g00524 769 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 212 708 - -
Adu05g00524 769 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 327 546 - -
Adu05g00524 769 PANTHER DNA LIGASE 1 26 200 - -
Adu05g00524 769 Gene3D DNA ligase/mRNA capping enzyme 364 490 - -
Adu05g00524 769 PANTHER DNA LIGASE 1 212 708 - -
Adu05g00524 769 Gene3D - 545 709 IPR012340 -
Adu05g00524 769 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 97 325 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 CDD Adenylation_DNA_ligase_I_Euk 324 543 - -
Adu05g00524 769 Gene3D - 345 544 - -
Adu05g00524 769 ProSiteProfiles ATP-dependent DNA ligase family profile. 442 578 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu05g00524 769 Gene3D - 210 337 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 Gene3D - 91 203 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu05g00524 769 MobiDBLite consensus disorder prediction 727 741 - -
Adu05g00524 769 Coils Coil 694 714 - -
Adu05g00524 769 MobiDBLite consensus disorder prediction 697 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00524 Adu-Chr5 5501359 5507563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00524 5 696 Core DNA Replication Machinery Family AT1G08130 61.905 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00524 K10747 - aip:107642653 1230.7