Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00518 ATGTATCCAGTTGGAGCCACGTCAGTGTGTTGTGCAGTTTGCAATGCAGTGACAGCAGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 336 0.4792 MYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00518 111 Pfam LSD1 zinc finger 32 56 IPR005735 -
Adu05g00518 111 Pfam LSD1 zinc finger 70 94 IPR005735 -
Adu05g00518 111 Pfam LSD1 zinc finger 1 17 IPR005735 -
Adu05g00518 111 PANTHER PROTEIN LOL1 1 107 - -
Adu05g00518 111 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 29 58 IPR005735 -
Adu05g00518 111 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 97 IPR005735 -
Adu05g00518 111 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 1 20 IPR005735 -
Adu05g00518 111 PANTHER PROTEIN LSD1 1 107 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Adu05g00518 zf-LSD1 9.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00518 - - dcr:108192347 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00518 05 5446760 5448975 Adu01g01224 01 26891142 26893670 PCT