Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00474 ATGCATTCCAACACTGTTCCTGTTGCCTCCAGAACTCGTTCAAGAAAGACCGCCACAACCACCATGAGCCTGAGTAGCTCCGACGATGACGAAGTCGTCGTTAAAGGGGAAACTCCCCCGAAACCTCAACCTGAACGCGGCAGCGCAGAAGGCAGCGGTAACAGAGACGGCGAGAATGTGAAGGAGGGCGAGAACAGAGAAGATATAACGAGGAAAAGAAGAAAATTTGGGGTTGACATTTTGATTGACCAGGGTCCCATCCCCGATGGTAAGAGTGTTGCACACAGGACTCGTTCCCATTTCCCGAAGAGCAAGAAGCACCTCCTTTTTGGGACTTTTAGTCAACCAATTTGTCTTGCTGATGATGATGATGATGAAGAACAAGAACAAGAACAAGAAAAGGAAGAAGGGCAACAACCTGGGAAGCAAGGTGAAGATGATGAAGAAGAACATGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACgacgacgacgacgatgacgacaacgacgacgatgacgacgagtctctttatgaatcagaagaaactgatttggaggaggaggatgatgaTGATGACGACGACTACAGCGTAGAGAGAGATGCATGTATGAACAATGTGGCCAATTTCGAAGGGAAGAAGCAAAAGCGGAAGCGTGTTGATGTGGCTAGCATGTTAAGGGATATGATGTTTGGCAAGGGAGAGGTGCCTTTGCTGGAGTCTGTGGAAGAAGAATCAGGTGCAACTGTGGTGACCATGGACGTGCCAACAAGGTCCCCTTTCAACAGTGAGAAGCACGCGCCACCGGAGAAATCGACTGAGCAGGAAGTGCTGGATGCTATTTGGGCTGAGATGGAGCGTGGCTTCAGCTCTGATCCTTTTGAAGAGGAGCAGGGTTCTAATGAATTCAAATGCAGAGGTTCCAAGAGGGAAAAGGGATCTGCTTTTGAATTTACAAGGAAGAGAGAAGATCAAGATCTAAAAGGGCTTGGTGGGGAGTTTCAGGATTGTGTTGCCCAAGAGAAGGGTAAATTGTCTAGCAAGTCATGCATTGAGGGGGGAAATTCATGTGTGGATTTTCCTTTCAAGTTTACTTTTTTAACTAAGGAACCGCCAGCGGAGAAATCCCAAGATGAGAAAGAAATAGATACGATCTGGTCTGAGATGGAGCTTGGTCTTCATGTTATCCAACAAGACTCTGCTTCTGCTCCTCAGGGTGAAAATAATGCTAATTCGGATCGTGATCAATTTCCGGTGGAAGGTGATGCTAACACACCCCCTCTTTTTCGCTGTCGAAAAGGGGAACACAATCTTGTTCTTGATGAGGAAATTGGGCTTATCTGTAAATATTGCTTGCATGTGGCACTGGAGATCAAGAATTGGGTTCCTCCTTTTGTTGAAAGTCCATGGGAAAAATCTGACAGGAGAGATTATTATTATTATGGGGATGATGTTGACCGGTCTGTCTTGGATGAGCTTCATGATCGAACTTCTTGGAGTGATGATTATAACCTTGGTAATCACAAGGGGACAGTATGGGATATGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAATGCGAAGCTTTTGAATTTCTCTGGAGTCATTTAGCTGGTGGAATTTTTCTTGATCAGCTTAAAGAAGAAAACACTGGAAATGGATGCGTTGTATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGGCTTACATGAAGTTATATCCAGCATGCTCACCAATGATTATTGCTCCTAAAAGCATGCTCCTTACATGGGAAGAGGAGTTCAAACTATGGAAGGTTGACATTCCCTTTCACAATGTGAACAACTCTGAATACTCTGGCAACGAGAATGAAACAGCTCGTAATCTTATCAATAAATTTGGTCGTAATGCTTCGACTCAGGCAGCAAAGCGGAATTGTCGTACAGCTAAGTTCTATTCCTGGAAGCTTGGCAAAAGCATCTTGGGAATTAGCTACAAATTGTTCGAGCTACTTACCCGGCAGGGCTCCCGGGACAAGGTCCTGAGGAAGTTCCTTCTTGAACAGCCTAGTTTGCTAGTTCTTGACGAAGGGCACACTCCCCGCAATAAGACATCTGCTGTATGGAAATCCGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTTCCGGAACTCCCTTTCAAAACAACTTTAGGGAGCTATACACCACACTGTGCTTGGCAAGGCCTAAATTTGCTGATTTGAATCCAAGAGATGAACATAGAGGGAGATGGCAATATCTTGTCAATTCATATGGAAAGGTTACTGATTCCAGTAGAAAATTAAAGATATTGAAAGAGATCCGAGAAATGATCCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGACAGTCTCCCAGGGCTGAGGCAGTTGGTAGTCATATTGAAGCCAACCCAGTTGCAGGAGAAATTGCTTCAAGATATTAAGAAGAGATTTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAGCAGCGTTTCATCCTTCTCTTTGCGAAATAGCTGAAGACAAGGAGAAGATACAAAAGTGTAGATTGAACCCCAACGAAAGTGCCAAAACAAAGTTCTTAATGGAACTTATCAGGATCAGTGGAATTTTCAATGAAAAAGTTTTGATTTTTAGTCAATTCATTGAACCTTTGAAGCTTCTACTGAGCCAGCTGAAGCAACATTTTAGTTGGACCGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGACAGGCTTCAATCCACACTTTCAATGATCCGAACAGCAAAGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTACGAAGGTATCAGTTTGGTAGGTGCCTCGAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAAGCAAGCAATAAGCCGTGCTTATAGGCTCGGCCAAAAGAAGCTCGTGTTTACTTACCATTTGATCACTAAGGGGACAACGGACGAGAAAAAATGTGGTCGACAAGCTGTGAAGGACCAGTTGTCAGAGTTCGTGTTCTTTCATTCCGAAGGTGGGGCTCAAAATCGTCAACTCTTTTCATCCGCTGAATTGGAAGATAAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTCAGACACATAATTGAAAAAGTAGCTATTAAGAAACCAAATCTACTTTGA 3219 0.4265 MHSNTVPVASRTRSRKTATTTMSLSSSDDDEVVVKGETPPKPQPERGSAEGSGNRDGENVKEGENREDITRKRRKFGVDILIDQGPIPDGKSVAHRTRSHFPKSKKHLLFGTFSQPICLADDDDDEEQEQEQEKEEGQQPGKQGEDDEEEHVEEEEEEEEEEDDDDDDDDNDDDDDESLYESEETDLEEEDDDDDDDYSVERDACMNNVANFEGKKQKRKRVDVASMLRDMMFGKGEVPLLESVEEESGATVVTMDVPTRSPFNSEKHAPPEKSTEQEVLDAIWAEMERGFSSDPFEEEQGSNEFKCRGSKREKGSAFEFTRKREDQDLKGLGGEFQDCVAQEKGKLSSKSCIEGGNSCVDFPFKFTFLTKEPPAEKSQDEKEIDTIWSEMELGLHVIQQDSASAPQGENNANSDRDQFPVEGDANTPPLFRCRKGEHNLVLDEEIGLICKYCLHVALEIKNWVPPFVESPWEKSDRRDYYYYGDDVDRSVLDELHDRTSWSDDYNLGNHKGTVWDMIPGVKKTMYPHQCEAFEFLWSHLAGGIFLDQLKEENTGNGCVVSHAPGTGKTRLAIVFIQAYMKLYPACSPMIIAPKSMLLTWEEEFKLWKVDIPFHNVNNSEYSGNENETARNLINKFGRNASTQAAKRNCRTAKFYSWKLGKSILGISYKLFELLTRQGSRDKVLRKFLLEQPSLLVLDEGHTPRNKTSAVWKSVSEIETKRRIILSGTPFQNNFRELYTTLCLARPKFADLNPRDEHRGRWQYLVNSYGKVTDSSRKLKILKEIREMIQPFVHVYKGTILQDSLPGLRQLVVILKPTQLQEKLLQDIKKRFDNVLKLEYEESVAAFHPSLCEIAEDKEKIQKCRLNPNESAKTKFLMELIRISGIFNEKVLIFSQFIEPLKLLLSQLKQHFSWTEGREVLQMHGKQEAKLRQASIHTFNDPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVEKQAISRAYRLGQKKLVFTYHLITKGTTDEKKCGRQAVKDQLSEFVFFHSEGGAQNRQLFSSAELEDKILEQIIEQEKFRHIIEKVAIKKPNLL 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00474 1072 CDD SF2_C_SNF 870 1001 - -
Adu05g00474 1072 Pfam SNF2-related domain 542 848 IPR000330 GO:0005524|GO:0140658
Adu05g00474 1072 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 1066 IPR044567 GO:0080188
Adu05g00474 1072 MobiDBLite consensus disorder prediction 403 417 - -
Adu05g00474 1072 Gene3D - 504 792 IPR038718 -
Adu05g00474 1072 Gene3D - 805 1068 IPR027417 -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 403 422 - -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 247 276 - -
Adu05g00474 1072 SMART helicmild6 901 990 IPR001650 -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 1 203 - -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 147 200 - -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 1 28 - -
Adu05g00474 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 874 1072 IPR001650 -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 51 79 - -
Adu05g00474 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 791 IPR027417 -
Adu05g00474 1072 MobiDBLite consensus disorder prediction 119 133 - -
Adu05g00474 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 549 747 IPR014001 -
Adu05g00474 1072 SMART ultradead3 521 757 IPR014001 -
Adu05g00474 1072 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 7 1066 - -
Adu05g00474 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1025 IPR027417 -
Adu05g00474 1072 Pfam Helicase conserved C-terminal domain 873 990 IPR001650 -
Adu05g00474 1072 Coils Coil 142 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00474 Adu-Chr5 4921679 4925847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00474 866 1045 RAD5 or RAD16-like Gene Family AT5G43530 36.612 2.45e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu05g00474 SNF2_N 5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00474 K10875 - vvi:100267731 696.812