Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00440 ATGACCATGGAAAACCAAGATTTGGGGCTCACCCTAAGTTTGAGCTTCCCTCAACAACAACTCAATCTCATCCCTTCTCCCTACAAAACCCCTTCTTGGAACAACCAACCCTTCAATTCTTCAGATAATCGAGATTCGGAGACATGCAGGGGCAGTGCTGAAGGTGGATCGTTCCTCCTCCGGGGGATCGACGTGAACAGCTTGCCGTCCGGCGTGGACTGCGAAGACGACGCCGGAGTGTCGTCGCCGAACAGCACAGTTTCGAGTGTGAGCGGCAAGAGGAGCAGCGAGAGAGAACAAAATAATGGCGAAGATCACGACACGGAGAGAGCTTCTTCCAGAGGCATCTCCGACGAAGAAGACGGTGAAACCTCCCGCAAGAAGCTCAGGCTCTCTAAGGACCAATCCGCTGTCCTGGAAGAGAGTTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTAGCACTAGCAAAGCAGCTTGGCCTTCGCGCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGGGCAAGGTTGGTATTTCACACTTTCTTCCACCTCTTTTATTTATTTATTTATCACTTTATTTATTTACGGTTTATTTGGTTTTTCAGGACGAAGCTGAAGCAAACAGAGGTTGACTGTGAGTTTCTAAAGAGATGCTGTGAGAATCTAACGGAGGAGAATAGGAGACTACAGAAGGAGGTTCAAGAACTGAGAGCACTCAAGCTTTCCCCTCAGTTCTACATGCAGATGAGTCCGCCAACTACCCTCACCATGTGCCCTTCGTGTGAGCGCGTCGCTGTTCCTCCCTCAGCCGTCGATCCCGCCACGCGTCATCATCAGATGCCACAACCCCATCACCACACTCGGCCCATTCCAATTGGGCCCTGGGCCGCTGCTCCTCCTGTCTTCCGTCCCAGGTCGTGA 930 0.5097 MTMENQDLGLTLSLSFPQQQLNLIPSPYKTPSWNNQPFNSSDNRDSETCRGSAEGGSFLLRGIDVNSLPSGVDCEDDAGVSSPNSTVSSVSGKRSSEREQNNGEDHDTERASSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARLVFHTFFHLFYLFIYHFIYLRFIWFFRTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMSPPTTLTMCPSCERVAVPPSAVDPATRHHQMPQPHHHTRPIPIGPWAAAPPVFRPRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00440 309 Pfam HD-ZIP protein N terminus 3 96 IPR006712 GO:0005634
Adu05g00440 309 PANTHER - 205 303 - -
Adu05g00440 309 CDD homeodomain 126 179 IPR001356 GO:0003677
Adu05g00440 309 Pfam Homeodomain 126 178 IPR001356 GO:0003677
Adu05g00440 309 SMART halz 209 252 IPR003106 GO:0006355|GO:0043565
Adu05g00440 309 SUPERFAMILY Homeodomain-like 113 178 IPR009057 -
Adu05g00440 309 MobiDBLite consensus disorder prediction 70 132 - -
Adu05g00440 309 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Adu05g00440 309 MobiDBLite consensus disorder prediction 97 132 - -
Adu05g00440 309 PANTHER - 2 179 - -
Adu05g00440 309 SMART HOX_1 124 186 IPR001356 GO:0003677
Adu05g00440 309 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Adu05g00440 309 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Adu05g00440 309 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 179 - -
Adu05g00440 309 MobiDBLite consensus disorder prediction 274 296 - -
Adu05g00440 309 MobiDBLite consensus disorder prediction 25 46 - -
Adu05g00440 309 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 205 303 - -
Adu05g00440 309 Coils Coil 208 245 - -
Adu05g00440 309 MobiDBLite consensus disorder prediction 79 96 - -
Adu05g00440 309 Gene3D - 132 179 - -
Adu05g00440 309 MobiDBLite consensus disorder prediction 25 53 - -
Adu05g00440 309 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00440 Adu-Chr5 4561513 4563308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00440 1 309 Homeobox Transcription Factor Family AT5G47370 54.192 4.07e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu05g00440 HD-ZIP_N 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00440 K09338 - gmx:547858 362.073