Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00388 ATGGAGTTTGTGCCAAATCCGTGTCCTCTGAGGTCCTCTCTGTTCGGTTCCTTCGGGGATCTCGTCGAGAGGATCAAGCAAATTGGAACCCTCGCTGTTTCTGCCGTCATTGGCAACATCTTCTCTGCGATCTTGACCTTCTGCTTCGCATTAGTTGGGACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGACAAGAGACTGAGAGTGGCTTCATTAGAGGTGCTGCTGTTGGTGCCATCTCAGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCCTCTCTTGTTCTTTGGCAATCTGATGAGTCTGGAATTGGGTGTCTCTTGTACCTGATTGATGTTATTGCTAGCTTAGTGAGTGGGAGACTTGTTCGTGAGAGGATAGGTCCAGCAATGTTGAGTGCAGTTCAGAGTCAGATGGGTGCTGTTGAAACCGGTTTTGATGAAGTTCAAAACATCTTTGACACTGGTGGTTCAAAAGGCTTATCTGGAGATTTGGTCGAAAAAATCCCAATAATCAAAATTACTAGTGACAACAATGTTGATGCTTCTGGTGAAAGAGCGTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGTCAGTTAGAAGCTTGCCCCATTGTCATCACATGTTTCACCTACCCTGCATAGACAAGTGGCTGTTTAGACATGGTTCTTGTCCATTATGCAGAAGGGATCTGTAA 708 0.4576 MEFVPNPCPLRSSLFGSFGDLVERIKQIGTLAVSAVIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLVSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGGSKGLSGDLVEKIPIIKITSDNNVDASGERASCSVCLQDFQLGESVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00388 235 CDD RING-H2_PA-TM-RING 190 232 - -
Adu05g00388 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 12 235 - -
Adu05g00388 235 Pfam Ring finger domain 189 232 IPR001841 -
Adu05g00388 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Adu05g00388 235 SMART ring_2 190 231 IPR001841 -
Adu05g00388 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 235 IPR044523 -
Adu05g00388 235 SUPERFAMILY RING/U-box 189 235 - -
Adu05g00388 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00388 Adu-Chr5 4076039 4078751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00388 21 235 C3H Transcription Factor Family AT5G66070 77.209 2.46e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00388 - - gmx:100807641 429.098