Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00353 ATGGATCACAGAACAGAGGAAGAAGAAGGAGAACAACAAAATTTGGGAGAAGGAGTGCATGACGAGAAGAGGAGAAAGCAGAAGATAACAATAAGGTTGGTTTATGCTGATGGATCAAGTAGATGGAATTCGTCTTCTAGTTGTACTGCTTTGTCTTACTGTTGTCAAGCAGATGAATGCTTAGCAGACTTGCAAGCTGCTAAGAGGTACAATCGCCGTCACAAGGTTTGCGAGCGACATGCTAAAGCTCCAGTTGTCTTAGTTTCTGGCACTCGACAAAGATTCTGCCAACAGTGTAGCAAATTTCATGAGCTAGCCCTGTTTGATGACAACAAAAGGAGCTGCAGAGAAAGATTGGCCAGTCACAATGAGCGTAGAAGAAAAGCTCAAGCTCATCATGCAGACCTTCAACCCCAACCAGAGAGCGATATTAATTAA 438 0.4338 MDHRTEEEEGEQQNLGEGVHDEKRRKQKITIRLVYADGSSRWNSSSSCTALSYCCQADECLADLQAAKRYNRRHKVCERHAKAPVVLVSGTRQRFCQQCSKFHELALFDDNKRSCRERLASHNERRRKAQAHHADLQPQPESDIN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00353 145 MobiDBLite consensus disorder prediction 1 24 - -
Adu05g00353 145 SUPERFAMILY SBT domain 53 133 IPR036893 GO:0003677|GO:0005634
Adu05g00353 145 MobiDBLite consensus disorder prediction 121 145 - -
Adu05g00353 145 Pfam SBP domain 55 128 IPR004333 GO:0003677
Adu05g00353 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 138 IPR044817 GO:0003677
Adu05g00353 145 ProSiteProfiles Zinc finger SBP-type profile. 52 129 IPR004333 GO:0003677
Adu05g00353 145 PANTHER - 7 138 - -
Adu05g00353 145 Gene3D - 51 116 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00353 Adu-Chr5 3741903 3742439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00353 55 145 SBP-box Gene Family AT1G53160 58.242 2.17e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu05g00353 SBP 8e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00353 05 3741903 3742439 Adu05g00353 05 3741903 3742439 ECH