Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00346 ATGGGAGGTGAAGGCGCTGTGGAGGACTCCAAGGCCAACACCACCGAGGGAGGAGGCGGTGGAGGAGGAGTCAACATCAACATTCGGTGCTCGAACGGTTCAAAGTTCTCCGTTTCAATTGGTCTAGATTCCACCGTCGTCTCCTTCAAGGAGGTTGTGGCTCGCAGTTGTGACATACCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGATGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCAGGTGCTGGTAGTGGGACCAATAGTACTGGTGCTAACAGCACAGCTAATACGAGAGGTGCCGGTGCTACTGAGGGTGGGGGCTTAGGTGCTTCACCATTCCCTGGGTTAGGACTCAATGGGATGGGGGGCAATGGCCTTGGTGGCTTATTTGGAGCGGGCTTTCCTGATCTTGAACAGATGCAGCAACCATTCTTGTCAAATCCCAATATTGTGAGGGAAATAATGAACACACCTGCCATGCAGAATTTAATAAATAATCCCGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATCCTTAATGATCCCAGCACACTTCGCCAAACACTTGAAGCTACAAGGAATCCTGAGATCATGCGCGAAATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAGCCCTTTCTAAATGCCACTACAATGACTGGTAATACAGGAAATGAACAAGTTAGGAACCAAGCGACAAATCCCTCAACTACTAGTTCTGATGCAACTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTGGGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACTGGTGCGGATGCTCGGCAGCAGACACCACCCACTGGCTTAGGAGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGCATGCCAGATTCTGCTTTACTCACACAGTTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTCTCCAATCCGCAGACTATGAATCAGATTCTTGGAGTCAATGCTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGAAGTGATGCAAAACCCAGAATTTCTTCGTCTATTTTCCTCACCAGAGACCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCCCTGGATCGATGAACAACTTGAGTTTGGAAATGCTATCGAGCATGTTTGGCGGACTTGGAGCTGGCAGCCTAGCTGTTCCAAACAGATCAAATGAACCACCTGAGCAGCTGTATGCTACCCAACTTTCGCAGCTGCAAGAGATGGGATTCTTCGACACGCAAGAAAACATAAGGGCTCTTATTGCCACGTCGGGGAATGTTCATGCAGCTGTTGAGCGCCTTTTGGGGAACTCTGGACAGTAG 1596 0.4906 MGGEGAVEDSKANTTEGGGGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSGAGSGTNSTGANSTANTRGAGATEGGGLGASPFPGLGLNGMGGNGLGGLFGAGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTTSSDATSPVPNTNPLPNPWSSAGTGGAQNTTRRSTTGADARQQTPPTGLGGAGLPDLDGMLGGMPDSALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQSTQEPGQTGGGPGSMNNLSLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00346 531 PANTHER UBIQUILIN 1 531 - -
Adu05g00346 531 SUPERFAMILY Ubiquitin-like 16 112 IPR029071 -
Adu05g00346 531 MobiDBLite consensus disorder prediction 436 458 - -
Adu05g00346 531 Gene3D - 471 531 - -
Adu05g00346 531 MobiDBLite consensus disorder prediction 100 119 - -
Adu05g00346 531 Pfam Ubiquitin family 26 93 IPR000626 GO:0005515
Adu05g00346 531 CDD UBA_PLICs 489 527 - -
Adu05g00346 531 Gene3D - 191 249 - -
Adu05g00346 531 MobiDBLite consensus disorder prediction 100 127 - -
Adu05g00346 531 MobiDBLite consensus disorder prediction 1 24 - -
Adu05g00346 531 Gene3D - 22 107 - -
Adu05g00346 531 Pfam UBA/TS-N domain 489 525 IPR015940 -
Adu05g00346 531 SUPERFAMILY UBA-like 485 527 IPR009060 GO:0005515
Adu05g00346 531 CDD Ubl_Dsk2p_like 24 96 - -
Adu05g00346 531 ProSiteProfiles Ubiquitin domain profile. 24 93 IPR000626 GO:0005515
Adu05g00346 531 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 531 - -
Adu05g00346 531 SMART uba_6 489 527 IPR015940 -
Adu05g00346 531 MobiDBLite consensus disorder prediction 270 334 - -
Adu05g00346 531 MobiDBLite consensus disorder prediction 270 344 - -
Adu05g00346 531 SMART CBM 390 425 IPR006636 -
Adu05g00346 531 SMART CBM 142 183 IPR006636 -
Adu05g00346 531 SMART CBM 196 235 IPR006636 -
Adu05g00346 531 SMART CBM 345 387 IPR006636 -
Adu05g00346 531 SMART ubq_7 24 95 IPR000626 GO:0005515
Adu05g00346 531 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 483 528 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00346 Adu-Chr5 3670655 3675153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00346 24 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00346 K04523 - gmx:100797539 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00346 05 3670655 3675153 Adu05g00346 05 3670655 3675153 ECH
Adu05g00346 05 3670655 3675153 Adu01g00843 01 11283979 11288389 PCT