Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00341 ATGGAGGAAAAATATGATTCAATATCGGAAGTAAATCTCAAGAGGCTTTGGTGGAATTTTAAAGTATATATTGTTAGGATATGGGAAGAGCTTAGCAAATACAACAAACAAGAGACTTGGTCTATTGAAATGGTTTTGCAAGACAATAAGGGAGATAGGATTTACTCTACTGTGCCAAGAGCTTTGGTTCAGAAGTGGACTCCGATTCTGCACGAGTTTCAAATGTATACGATGACAAATTTCACAGTAGTTGACAACAAGACAAAGACAAAAAATGGTGTCAGTAGATATGTGTTAACATTTTCGCACAGAACTAAAGTTACTCATGTGGAGGTCCCTACATTCCCTTTACAAGCGTTTCGCTTTCGTTCATTTGTTGATCTCCAAAATGCCATGCTTGGAGATGCTGATATGTTTGTGGGAAAGGAAGAACCAAGAGATCTGATAACTAGCAAGGGGAGGGAGACCAAGCGATTGGTGGTTATTCTCCAAGATTTAGACAACAACCGGATGAGCTGCACTTTGTTTGGTGACTTGGTGGACCAAATCGTACCTCACCTACAGGAGGAGAGGGTAGAACCACTCATCGTGGTTATGCAGTACTTTAAGGTATCCAGGTGGAATGGAAAAACATCTGTTCAAAGCAATTTTGCAATATCCAAGGTCCACATCAACCTGGATCTAGAAGAAGTCAATTTTTTCAAGACCAGAGTTGTTAGTGCTGGCCCATCAAGCGTATCCAGGATAAGCTATGTATCATCTCCTAGGGATTGGTCTGCAGCAGACGAGCTTAAGAATGGTTGTGTCGCTGTCAAAACAATAGAAGAAGCTCTTAATGTTGCTCAGGAAGGTCCTATATGGATCGCTGGCACCATTGTATCCATTAATGCTGGAAAGGCAGGTTGGTTTTATAAGGCATGTCGAAGGTGTCTAAAGAAGGTTGAAACCCCTGTTGGTACTAGATATGAATGTGCAAAGTGCGGCCACACACATGGAGTAGCTGCACTCAGGTACAAGGTTGAAGTTATGGCTCATTATGAGACAGGTAGCATTTGTTTGCTACTGTGGGACAGGGAGACCACACAGTTGTGCGGAAAGCCAGCCGAGTCAATCTTTAATGAGGAGCTTGCTCCAGACGATGAGTATCCACATACGCTGGACAACATGATGGTCAAAAAGGTGCTGTTTAAGCTTAATGTTAAGGCTGCAAATGTCAAGCAGTACGATCCAGTCTACACTGTGATGAAGGTGTGTGATGATGAGGATACCATATCGAAGAACCTCCCAACGACTTTAGTCGACAATAATACTCATGTAGTTAATGAGGCTGGGAACAATAATTCGTTCGATATACCAGGCATTGTTGTTAATCTTACAATTGACAATGATACTCACTTTAATATGGAACGTGTTAGTATCATCAAGTTCAAAACTCCAGCTAAAAGAGTTGCCAGTAGTGTAAAGGTTGCAACTATCAATCTCAAGCAGGATGAGGAGGAAGTTCATCACTCCACTAATAGATTTACTCGCAAGCTTTCTAAGAAGATGAAATCCCAACAGTCAGATATTGATAGTTAA 1578 0.4138 MEEKYDSISEVNLKRLWWNFKVYIVRIWEELSKYNKQETWSIEMVLQDNKGDRIYSTVPRALVQKWTPILHEFQMYTMTNFTVVDNKTKTKNGVSRYVLTFSHRTKVTHVEVPTFPLQAFRFRSFVDLQNAMLGDADMFVGKEEPRDLITSKGRETKRLVVILQDLDNNRMSCTLFGDLVDQIVPHLQEERVEPLIVVMQYFKVSRWNGKTSVQSNFAISKVHINLDLEEVNFFKTRVVSAGPSSVSRISYVSSPRDWSAADELKNGCVAVKTIEEALNVAQEGPIWIAGTIVSINAGKAGWFYKACRRCLKKVETPVGTRYECAKCGHTHGVAALRYKVEVMAHYETGSICLLLWDRETTQLCGKPAESIFNEELAPDDEYPHTLDNMMVKKVLFKLNVKAANVKQYDPVYTVMKVCDDEDTISKNLPTTLVDNNTHVVNEAGNNNSFDIPGIVVNLTIDNDTHFNMERVSIIKFKTPAKRVASSVKVATINLKQDEEEVHHSTNRFTRKLSKKMKSQQSDIDS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00341 525 SUPERFAMILY Nucleic acid-binding proteins 141 237 IPR012340 -
Adu05g00341 525 Pfam Domain of unknown function DUF223 43 116 IPR003871 -
Adu05g00341 525 SUPERFAMILY Nucleic acid-binding proteins 271 419 IPR012340 -
Adu05g00341 525 CDD RPA1_DBD_B_like 149 238 - -
Adu05g00341 525 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 19 445 - -
Adu05g00341 525 MobiDBLite consensus disorder prediction 503 525 - -
Adu05g00341 525 CDD RPA1_DBD_A_like 21 107 - -
Adu05g00341 525 Pfam Replication factor-A C terminal domain 289 417 IPR013955 -
Adu05g00341 525 PANTHER REPLICATION FACTOR A 1, RFA1 19 445 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu05g00341 525 Gene3D - 114 245 IPR012340 -
Adu05g00341 525 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Adu05g00341 525 Gene3D - 6 111 IPR012340 -
Adu05g00341 525 Gene3D - 262 427 IPR012340 -
Adu05g00341 525 CDD RPA1_DBD_C 271 417 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00341 Adu-Chr5 3631844 3634637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00341 114 372 Core DNA Replication Machinery Family AT2G06510 25.455 1.59e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00341 - - adu:107477039 571.622