Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00303 ATGAGTGATGCGAAAGAAAATGAGGAAGTTGGCCAGGGTGTGCCCTCGGCTATGGAAGAAAACCAACACTTAGATGATGCCAATTTTCAAATTCAACCTGATGCTTCTTCTACTCCTGCTCCAGTAGAGGAAAGTCCAAATCACGTCAAAAACATATCGAAGGAGCCGCCTGTTGAGTCTAAGGCGGAGGCATCTGCTGAGTCTAAGACAGAGCCACCTGCTGAGTCTACGGCTGAGCCACCTGCTGAGGTTATGGCAGAGCTGCATCCTGTGGCAAAGGCAGAACCACCTCCAGAGGCCAAGGCAGAGCCATCTCCTGAGGTCAAGGCTGAGCAACCTCTTAGAGCTGTGTCAGAGCCATCTGCTGAGGCTAAGTCAAAGTTACCTGCCCAGGCTACGGCAGTACCACCTGCGGAAGCTGAGGCAGATCCTCCTTCTGAGGATAAGTCTGAGCAAGCTTCTGAGACTAAATCTGTGCTACCTGCTGAAGCTATGTCAGCACCAGATTCTGCGGACAAGGCTGAGCCACCACTTGAGGACAAAAGTGAGGATCAAGAGGTGGTTCCTGAGGGTATTCAACAGCAAGATATTCAAAGTAGTGAAAATACTCTTCAGTCAGTCACAGTAGAGCTTGATGTAAATAGAACTGATCGTGAGGAAGCTAATGAAATTCCTCAGAGCAATAATGGTACAGAGGATGATGTGAATGTTTGTACAAATAATGCCAATGTTGCTGAAACAACAGCAGAAGTGAAGCCTGAAGATGGTGAAGTGGCTAATGGTAAAAGTTGCAACCATGTTGAACCCATACCATCCGGGCATGATGAGCCTTCTATGCTGCAAGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGAGAATAAGACTGATGAAAATCAAGCTGCTGCAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCTTTTCTTGGACGCAGACCATTGTTATGATGGGAATGAGTCAGGGACGGAGGAAGAGCAATCAGCATTCATGAAGGAGCTTGAAAATTTCTTTAAGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCTCGTGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGTACCACAGTTTCATGGACTTTCCGTGGGTTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATCGAAAATCAGACTTCAGCATCAGGTAGAGCGCGTAGAGATGCTGCAGCACGCGCTATGCGGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTCGGTGACCCCATTATTAAGAAGGATTGCTTTGAGGTATATGCTTTAGTTCCTGGTCTACTTCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTTATTAGTGGTGAGCCTGAGCATCTCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCGGTGGTAACTCTGCATGGACAGTTGTTTGTTCGGGTCCCATTTGAGCAATCAGAATAG 1719 0.4479 MSDAKENEEVGQGVPSAMEENQHLDDANFQIQPDASSTPAPVEESPNHVKNISKEPPVESKAEASAESKTEPPAESTAEPPAEVMAELHPVAKAEPPPEAKAEPSPEVKAEQPLRAVSEPSAEAKSKLPAQATAVPPAEAEADPPSEDKSEQASETKSVLPAEAMSAPDSADKAEPPLEDKSEDQEVVPEGIQQQDIQSSENTLQSVTVELDVNRTDREEANEIPQSNNGTEDDVNVCTNNANVAETTAEVKPEDGEVANGKSCNHVEPIPSGHDEPSMLQAXXXXXXXXXXXXXXXXXXXEVENKTDENQAAATADNGNENSSHMLFLDADHCYDGNESGTEEEQSAFMKELENFFKERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELSVPIPSQPEPMNIENQTSASGRARRDAAARAMRGWHSQRLLGNGEVGDPIIKKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00303 572 MobiDBLite consensus disorder prediction 173 187 - -
Adu05g00303 572 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 476 572 IPR002068 -
Adu05g00303 572 MobiDBLite consensus disorder prediction 23 44 - -
Adu05g00303 572 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 492 571 IPR045147 GO:0006357
Adu05g00303 572 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 128 492 IPR045147 GO:0006357
Adu05g00303 572 ProSiteProfiles ARID domain profile. 343 434 IPR001606 GO:0003677
Adu05g00303 572 SUPERFAMILY HSP20-like chaperones 491 568 IPR008978 -
Adu05g00303 572 SUPERFAMILY ARID-like 338 441 IPR036431 GO:0003677
Adu05g00303 572 Gene3D - 468 572 IPR008978 -
Adu05g00303 572 Gene3D - 343 440 IPR036431 GO:0003677
Adu05g00303 572 MobiDBLite consensus disorder prediction 256 324 - -
Adu05g00303 572 Pfam ARID/BRIGHT DNA binding domain 346 430 IPR001606 GO:0003677
Adu05g00303 572 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 128 492 - -
Adu05g00303 572 MobiDBLite consensus disorder prediction 308 324 - -
Adu05g00303 572 Pfam Hsp20/alpha crystallin family 491 571 IPR002068 -
Adu05g00303 572 MobiDBLite consensus disorder prediction 188 211 - -
Adu05g00303 572 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 492 571 - -
Adu05g00303 572 CDD ACD_sHsps_p23-like 491 567 - -
Adu05g00303 572 Coils Coil 280 282 - -
Adu05g00303 572 CDD ARID 345 430 - -
Adu05g00303 572 SMART ARID_2 340 430 - -
Adu05g00303 572 SMART bright_3 344 435 IPR001606 GO:0003677
Adu05g00303 572 MobiDBLite consensus disorder prediction 94 108 - -
Adu05g00303 572 MobiDBLite consensus disorder prediction 1 236 - -
Adu05g00303 572 Coils Coil 302 311 - -
Adu05g00303 572 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00303 Adu-Chr5 3215525 3221837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00303 492 570 ARID Transcription Factor Family AT1G76510 82.278 1.29e-40 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Adu05g00303 HSP20 8.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00303 - - lang:109348972 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00303 05 3215525 3221837 Adu05g00303 05 3215525 3221837 ECH