Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00166 ATGGGTCGCAAACACGACGCCGTTGTCGCAGCCGAACCAGTTGCCGTGCCATCACCAGCAGGAGAAGCCCCAAACAGTCCCAAACTCAAATCCGAGAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAACCAAGAACAAAACGGAACCGCTAGTCCAAAAAGAAAGCTCGACGAGATCCAGCCTCGAAACGCCGCCGAATCCGACAAGGGGAAAAAGAAGAAGAAGAAGCACAAGCGCGATTCGGAAGAGAACGTGGAGGAAACCAAAGCTGAATCCGTTGATGGAGCTGGCGGAGGCGGCGGAGGAGGAGATGAGTCGGTTACCGACGGGCATGTGGCGGTTACCGGGAAGAACGCCGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCTGGTTCGGGGCTGCCGGAAAACGTGCTGGAGTGCTGCAAGGGCTTCGAGAAGCCGTCGCCGATTCAGTCACGTGCATGGCCTTTCTTGTTGGACGGTCGTGATCTCATCGGAATCGCTGCAACTGGTTCAGGGAAGACGCTGGCGTTTGGGATTCCTGCCGTTATGCACGTTCTGAGCAAGCGGAAGAATAAAGCGGTGAAGGGTCGGAACCCTCTTTGCCTCGTGCTCTCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGTAAGTCTTGTGGTGTGGAGTCAGATTTGATTGAAATGGGTGTCTGTAGCCTAAAAGATGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTCGAACAAGTAGTCCGCTCTATACTGGGTCAGACATGCTCTGTTCGCCAAATGGTGATGTTTAGCGCTACTTGGCCCTTACCAGTTCATCAGTTAGCACAGGAGTTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCGAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTGCGCGTGATAACCGACTGGTTGCTTTACTGGAAAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGAGGTTGGAAGGTTGTGTCCATACATGGAGACAAAGCACAACATGATCGTACAAAGGCACTTTCATTATTCAAGAATGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGTGGATTGGATATTCCAGATGTTGAAGTTGTTATCAACTATAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAAAAGGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGACAAATTGTGCCAGATGCCCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCCCACTTTAAGGAAATTTCCGCTGATGCACCGAAGTCTCAAAAAATTACATTTGACAACTCTGACGAAGACTAA 1554 0.4781 MGRKHDAVVAAEPVAVPSPAGEAPNSPKLKSEKKKKKHKNKDKHNQEQNGTASPKRKLDEIQPRNAAESDKGKKKKKKHKRDSEENVEETKAESVDGAGGGGGGGDESVTDGHVAVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKAVKGRNPLCLVLSPTRELAQQISDVMCDAGKSCGVESDLIEMGVCSLKDVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDNRLVALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDED 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00166 517 Coils Coil 73 93 - -
Adu05g00166 517 CDD SF2_C_DEAD 319 451 - -
Adu05g00166 517 Pfam Helicase conserved C-terminal domain 333 442 IPR001650 -
Adu05g00166 517 Coils Coil 29 49 - -
Adu05g00166 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Adu05g00166 517 CDD DEADc 146 306 - -
Adu05g00166 517 Pfam DEAD/DEAH box helicase 235 291 IPR011545 GO:0003676|GO:0005524
Adu05g00166 517 PANTHER BNAA08G07020D PROTEIN 234 503 - -
Adu05g00166 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 305 IPR014001 -
Adu05g00166 517 SMART helicmild6 361 442 IPR001650 -
Adu05g00166 517 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 234 - -
Adu05g00166 517 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 234 503 - -
Adu05g00166 517 SMART ultradead3 147 322 IPR014001 -
Adu05g00166 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 481 IPR001650 -
Adu05g00166 517 Pfam DEAD/DEAH box helicase 153 234 IPR011545 GO:0003676|GO:0005524
Adu05g00166 517 Gene3D - 69 235 IPR027417 -
Adu05g00166 517 PANTHER BNAA08G07020D PROTEIN 26 234 - -
Adu05g00166 517 Gene3D - 236 310 IPR027417 -
Adu05g00166 517 MobiDBLite consensus disorder prediction 1 113 - -
Adu05g00166 517 Gene3D - 311 484 IPR027417 -
Adu05g00166 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 455 IPR027417 -
Adu05g00166 517 MobiDBLite consensus disorder prediction 43 70 - -
Adu05g00166 517 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 156 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00166 Adu-Chr5 1896956 1901102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00166 128 450 Eukaryotic Initiation Factors Gene Family AT3G19760 32.303 2.78e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00166 K14811 - gmx:100305353 793.112