Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00154 ATGACGACATGCAATCCGATCCCGAGCCGGAGCCCCACCACGACGATGCTCTCCTCGATGATTACGAGGACGAAGGGGACGGTGGCGATTGGCGACGCCGCGAGCGCTCGCAGACTCCGGTCTACGATCACGATTCGTCCAAGTCGAAGCCCAGGAAGAGGCTCGTTAAGAAGGGCGACACCGGGAGGCAGTCGGTGGCGCCGGAGCTCGAAGACGAGGTGGCGGAGGAGGAGTATGACGTCGGGGCGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTAAGAAAGCGTTTGGTGGAAAAGGAGGCAAAGATCATGACGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGCGGCGATTCTGAGGATGATCATGATGGTGTTAGGAACGTGGATGATGACAACTTTATAGATGACACTGGGGTGGAAGCTGGTGGTTACTATGGCAGTGATGAACCTCGTTCTCCTGGTGATGCTCCCCAGGCAGAGGAAGGTGAAGAGGATGATGAAATTAAGGATCTTTTCAAGGTAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAACGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTAATAAACTAAAGAAGTTGGATCTTCTAACAGAAGTCCTCTCGAAGAAACAGCTCCAATTAGAGTTTTTGGACCATGGAGTACTAACTTTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGACTATTTTAAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTGATCATGTTCTTATCGAAGTCCGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGGAACTGGTTGACAAATGGAGTCGACCCATATTTAATAAGAGTACACGGTTTGAGGACATGAGAAATGCTGAGGAGGACAGGATTCCTTTCAGGAGGCCAACCGTTAAAAAGCCGGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTCTGGATTTTGTGATCCGTCCCCAGTCTAAAATTGATCCAGAAGAAGTTAGAGCGCGAGCAAAAGCTGCTGCACAAGATCAGCAGAGAATGAAGATGAATAAGAAGTTGCAGCAGTTGAGGGCACCAAAGAAAAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAAGGTCGTGGCATGGTCAAATATTTGTAG 1521 0.4188 MTTCNPIPSRSPTTTMLSSMITRTKGTVAIGDAASARRLRSTITIRPSRSPGRGSLRRATPGGSRWRRSSKTRWRRRSMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKKAFGGKGGKDHDGEVKEMWDTIAGGDSEDDHDGVRNVDDDNFIDDTGVEAGGYYGSDEPRSPGDAPQAEEGEEDDEIKDLFKVGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLDLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILTILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNAEEDRIPFRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00154 506 Coils Coil 242 262 - -
Adu05g00154 506 MobiDBLite consensus disorder prediction 46 93 - -
Adu05g00154 506 PANTHER PROTEIN IWS1 HOMOLOG 1 142 506 IPR044204 GO:0009742|GO:0032784
Adu05g00154 506 MobiDBLite consensus disorder prediction 390 455 - -
Adu05g00154 506 MobiDBLite consensus disorder prediction 423 438 - -
Adu05g00154 506 Pfam TFIIS helical bundle-like domain 322 376 IPR017923 -
Adu05g00154 506 MobiDBLite consensus disorder prediction 145 183 - -
Adu05g00154 506 MobiDBLite consensus disorder prediction 142 220 - -
Adu05g00154 506 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 291 380 IPR035441 -
Adu05g00154 506 ProSiteProfiles TFIIS N-terminal domain profile. 296 379 IPR017923 -
Adu05g00154 506 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 235 382 IPR035441 -
Adu05g00154 506 PANTHER PROTEIN IWS1 HOMOLOG 1 142 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00154 Adu-Chr5 1792807 1796664 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Adu05g00154 Med26 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00154 K17498 - gmx:100801805 648.662