Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00133 ATGCAGATTTACGAAAACACCCCTGGGTGCTTGAAGGGCCATTTTAGACGCAGTTATTCTAAGCGAGAGCATCCACAACCTGAGCTTACACGCAAAGCAGGGAAGCTTCGCCTTCGAACTGTCCTCAATAGTAGTATTAGGATAGGGGAGGGGCTGGGGTCCTCTACTCTAGTCCTCTGCCCTTTGGATGGGACATACTTCAACTCTACTACAGAACATGTTGTAACCGCCAGCTATTACCGTTCTGGCCACCACCCCAAGTCACAAACACAAAGTCCGCGAAACCATAGCCTTATCCTCACGCCGCGTGTACCCTCCCACTCTCCTCATCACGCCACGTGTCGGACCCACCTCGTCCCATCGCATTACGCTTTGCTCACGCATCCTGGTGGTTCACTAACATTACGGAAGTCACTTCGCATAGCTAATAATAAAGAGCTAATTATTTTGGACTATAAAACTATAAATTATCCCATCCTTACCCTTTTTCGGTTTTCTAAGCATTCGTTTCCTCTCTTTCCTCATCCACTGTTTCTCTCCGTTTCTCTCACCTCGCCGGGAAACCTCTTCCCCTCGCCGGAAAACCGCTCCGTCTTCGTCAACCCCGTTCTCCGCCACCGGAGAAAATTGCTCACCGCCTTCCTATTGAAACGCTTGCATTCCCTTCGCAATTCGCCGCGGTTGCTTCAACAAGGCGGTTGGATCTCCCGGAGACACGGTTCTGGCCTTCTACTCGGTGCTCTTCGAGAATGTGGGGAGCCTCGTTGTGGTTTTGGGCTCGCTCTTAATTTGCAGCGTTCTGGATCGTGGTTTAGGACGGAGAACTACAGGGAGCGGCTTCGTAATGAGATGGTGGAAGGGAGAGTGCGTTTATCCAAGGAAGCTAGAAATGGGTTAGAAATTTTGAAGCGTAAAAGGCTTCAGCGAGCAAAGTCTGTCACTTCAACTGGCACAAGTGTAGCAAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGAGGATTGGCTTCATGTGGTGTGGGATTGCATGAGTGTCCTGTGTATTCTCCAACAAAAGATGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCTGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAAGGAGAAAGTAGGCTTCAAGTTTACAACTAGAGTGCAGCCCCTACGCCTTGCTGAATGGGATACTGAGGACAAAGTGACCTTTTTCATGAGTGGAAGAAATTATACATTTAGGGATTTTGAGAAAACGGCAAACAAGGTTTTTACTAGAAGATATTGCAGTGCTGGATGTCTTCCTGCCTCCTACTTGGAAAAAGAGTTCTGGCAAGAAATTGGTTGTGGGAAGATGGAAACAGTTGAATATGCGTGTGATGTTGATGGCAGTGCCTTCTCATCTTCTCCTTCCGATCAGCTTGGTAGCAGCAAGTGGAACTTGAAGAAACTTTCTCGGTTGCCGAAATCTACTTTGCGGCTCTTGGAATCATCTATTCCAGGAGTAACCGAACCCATGTTGTACATTGGAATGCTGTTTAGTATGTTCGCTTGGCACGTTGAGGATCATTATTTGTACAGCATTAATTATCATCACTGTGGGGCATCAAAAACATGGTATGGTATTCCAGGTCATGCAGCATTGGACTTTGAAAGGGTGGTGAGAGAACATGTGTATACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACACTATTTCCACCAAATATTTTGCTGGAACATGAAGTCCCCGTTTACAAGGCTGTTCAAAAGCCAGGGGAGTTTGTGATAACCTTCCCTAGGGCATACCATGCTGGATTCAGTCATGGTTTCAACTGCGGAGAAGCTGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCGGAGATATGCACTGCTTAATAGGATTCCTTTGCTTCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTGTATGCATCCATGGAGCTTGAAGATTCAGACATCTCTATAGGCTTGCTATACCAGCATTCTATTAAGGTTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCCCGTTGGTTACTAATGAAATCAAGAGCATGTATAAGTGTCTCTTCTCATTCCCATGGCGCGATTCTCTGTAGCGTCTGCAAACGCGACTGTTATGTAGCTTTTGTTGACTGCAGCTGTCACCTGCATCCAGTATGCCTACGACATGATATTGAATCCCTCGACTTAACCTGTGGGAGCAAATACACACTTTTTGTGAGGGAGGATATTACAGATATGGAAGCTGCAGCAAAGTTGTTTGAGCAGGAAGATGGGATTCTTCCGCAAACCCAAAGTGACCAAAACATGTATTGCCATCCTTTGTCAAATATGTTTCGGAAAGCTAAGGCAAATGGATACACACCATATTGTGAGCTGAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCAGACAACAAATAATCAAGAATGTGGTACACAAAGTCAATTTGTTTTCGGACATGGCTTGGAGTATCGAATGCCAGAAGTGCCTGAGGCTGCAACCACTCTTTGTTCTCTTTCAGAACCTCTTGAATCCTCCTCTTCTCTAAAAAATGTAAGTTGGTTCTTGAATATTTATGCATATTGCATCAGGAATAGAGCAGCAATTATTCCTAAACTACATCCTGGCGGAATCTGA 2778 0.4467 MQIYENTPGCLKGHFRRSYSKREHPQPELTRKAGKLRLRTVLNSSIRIGEGLGSSTLVLCPLDGTYFNSTTEHVVTASYYRSGHHPKSQTQSPRNHSLILTPRVPSHSPHHATCRTHLVPSHYALLTHPGGSLTLRKSLRIANNKELIILDYKTINYPILTLFRFSKHSFPLFPHPLFLSVSLTSPGNLFPSPENRSVFVNPVLRHRRKLLTAFLLKRLHSLRNSPRLLQQGGWISRRHGSGLLLGALRECGEPRCGFGLALNLQRSGSWFRTENYRERLRNEMVEGRVRLSKEARNGLEILKRKRLQRAKSVTSTGTSVANMMNRSGGDALRGLASCGVGLHECPVYSPTKDEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKVGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKTANKVFTRRYCSAGCLPASYLEKEFWQEIGCGKMETVEYACDVDGSAFSSSPSDQLGSSKWNLKKLSRLPKSTLRLLESSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRIPLLPHEELLCKEAMLLYASMELEDSDISIGLLYQHSIKVSFVNLMRFQHCARWLLMKSRACISVSSHSHGAILCSVCKRDCYVAFVDCSCHLHPVCLRHDIESLDLTCGSKYTLFVREDITDMEAAAKLFEQEDGILPQTQSDQNMYCHPLSNMFRKAKANGYTPYCELKLDSVVEFYTTPEQTTNNQECGTQSQFVFGHGLEYRMPEVPEAATTLCSLSEPLESSSSLKNVSWFLNIYAYCIRNRAAIIPKLHPGGI 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00133 925 Pfam C5HC2 zinc finger 741 792 IPR004198 -
Adu05g00133 925 Gene3D Cupin 345 696 - -
Adu05g00133 925 ProSiteProfiles JmjC domain profile. 492 662 IPR003347 -
Adu05g00133 925 SUPERFAMILY Clavaminate synthase-like 497 678 - -
Adu05g00133 925 Pfam JmjC domain, hydroxylase 522 645 IPR003347 -
Adu05g00133 925 Pfam jmjN domain 346 378 IPR003349 -
Adu05g00133 925 ProSiteProfiles JmjN domain profile. 345 386 IPR003349 -
Adu05g00133 925 SMART cupin_9 492 662 IPR003347 -
Adu05g00133 925 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 342 898 - -
Adu05g00133 925 PANTHER LYSINE-SPECIFIC DEMETHYLASE 342 898 - -
Adu05g00133 925 SMART JmjN_1 344 385 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00133 Adu-Chr5 1436266 1444672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00133 342 804 JUMONJI Transcription Factor Family AT2G34880 32.282 3.32e-63 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Adu05g00133 JmjC 2.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00133 - - gmx:100798611 1040.02