Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00113 ATGTCAACCAGAAAGACCAGAGGAGGCAGAAACCACCGTAATCACCACCGTACCCCTCACCACGACGACGACGACTCCTTCACTCCAAAGCCTCTCCACCAACAACATCATCATCAGCAGCAGCATTCCACTCCTCCGACTCACCACCGCCGCGGCCACCACAACCATTATCAACAACAGAAATTGCGTTTCGTCAAGAAATCAGAACTTGATTCTTCTGCTTCTGATTCCCTCCTTACCTCCGATCCTGTGGCGGTGCCTGCTGCTGATCACGTGACACCGCTACCACACGAGAACAACAACAACAACAACATCAGTGTCAGTGATGCTGTGACAGTAACAAGAGAGGTAGATCACAAGGCTTGTTCGAGCAACAGCAAGGAGGTGGATGACGACGATGCCGATGATTATGTTGTGAATAGGCTTCGTAGGTTATTGGATGCGGTGGAAGAGCCTGCGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGGAAGATGAGTTACTTGTGGTGGAGTCGATATACGGAGAAAATGTTAACAAGCTTGAAAGCTGGAAAGGCCTCCGTTGTTTTCAGATCCAAATACACATCGAAGTTTTGGGTGAAATTGCCATTATTGCTAAGCTGAACTCTTCTAATGAACTTGATGTTGCAAGCGGCAATTCGGATGACTTCTTCTACTCTTTCAAAGTTCAGTATCTTCCACCAATCGTTTTGACCTGCTTATTGCCCAAGTCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTTCTCTTACTCACCTGGGATTTGATAAGGAAATTATACTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGAGCGTGTTGTTTCAGGTTCCATATCCCTTGATGCTGCTATTCCTTTCTTGCGAGGTTACAATAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGCATTTGCTTTAGTGAATATCCAGGTACCGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTATGAGCGCTGGGAATCCATGATGCTGGAGAGAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGGTGTGAAACACCTTGCATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGAGCTTCTTCTTTCTAGAGGAAGTTAGAATCATGGCAATCAACCGAACCGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGGAGCATACTTTTGTTACCGCTGCAACAAATTAATTGATCCATCAGACCCATATGGGCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGCATTAACCATCGCCAGGTCGTAGGGCAACTACAGGCTGAACTCTTTCGGGAACGCGGCCTGCCCTGTCCTAACTGTCGTCAGTTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAAATTGTGAGGCGCGGGTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACTGAGGGGTAA 1908 0.4471 MSTRKTRGGRNHRNHHRTPHHDDDDSFTPKPLHQQHHHQQQHSTPPTHHRRGHHNHYQQQKLRFVKKSELDSSASDSLLTSDPVAVPAADHVTPLPHENNNNNNISVSDAVTVTREVDHKACSSNSKEVDDDDADDYVVNRLRRLLDAVEEPALMEEQLSTNDQLQEDELLVVESIYGENVNKLESWKGLRCFQIQIHIEVLGEIAIIAKLNSSNELDVASGNSDDFFYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSSLTHLGFDKEIILGRNGVNCVGDERVVSGSISLDAAIPFLRGYNKERHNENFLKELHECSICFSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISNLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQSFFFLEEVRIMAINRTEGCNKMKCSNCGAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFRERGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00113 635 SMART ring_2 358 405 IPR001841 -
Adu05g00113 635 SMART ring_2 584 613 IPR001841 -
Adu05g00113 635 SMART RWD2001b 168 303 IPR006575 GO:0005515
Adu05g00113 635 SUPERFAMILY RING/U-box 353 438 - -
Adu05g00113 635 SUPERFAMILY RING/U-box 576 632 - -
Adu05g00113 635 Gene3D Ubiquitin Conjugating Enzyme 154 305 IPR016135 -
Adu05g00113 635 ProSiteProfiles RWD domain profile. 168 303 IPR006575 GO:0005515
Adu05g00113 635 SUPERFAMILY RING/U-box 507 543 - -
Adu05g00113 635 SUPERFAMILY UBC-like 159 298 IPR016135 -
Adu05g00113 635 SMART ibrneu5 426 484 IPR002867 -
Adu05g00113 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 134 497 - -
Adu05g00113 635 ProSitePatterns Zinc finger RING-type signature. 375 384 IPR017907 -
Adu05g00113 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 506 574 - -
Adu05g00113 635 ProSiteProfiles Zinc finger RING-type profile. 358 406 IPR001841 -
Adu05g00113 635 SUPERFAMILY RING/U-box 426 489 - -
Adu05g00113 635 Pfam IBR domain, a half RING-finger domain 426 484 IPR002867 -
Adu05g00113 635 Gene3D - 506 575 - -
Adu05g00113 635 MobiDBLite consensus disorder prediction 1 16 - -
Adu05g00113 635 MobiDBLite consensus disorder prediction 17 32 - -
Adu05g00113 635 MobiDBLite consensus disorder prediction 42 58 - -
Adu05g00113 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 441 IPR013083 -
Adu05g00113 635 MobiDBLite consensus disorder prediction 1 58 - -
Adu05g00113 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 134 497 IPR031127 GO:0004842|GO:0016567
Adu05g00113 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 506 574 IPR031127 GO:0004842|GO:0016567
Adu05g00113 635 Pfam RWD domain 164 299 IPR006575 GO:0005515
Adu05g00113 635 Pfam zinc-RING finger domain 357 404 IPR001841 -
Adu05g00113 635 ProSiteProfiles TRIAD supradomain profile. 354 633 IPR044066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00113 353 556 ARIADNE family AT3G27710 23.661 7.61e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00113 K11971 - gmx:100500662 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00113 05 1239535 1242976 Adu05g00113 05 1239535 1242976 ECH