Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00103 ATGGATTACAGCCGAGACGGCGACGTCGTTCAAATCATCGCCGGCGCCGCTAATGACCCTTCCGTCTGGGCAACCGAAGAGGACTACAAATTCTGGAACAACGAAGGTGACAGCACGCCTTCCAATTCCGGCGGAGGAAGCGGATACGACCAGAGGAAGAAGGCAAGAAGCTCTCAGGACAACAACGCAACGACGTCGTCGAGCAACAACAATAGCAACAGGGCGAAGGCCATAGGGAAGATGTTCTTCAAGACTAAACTATGCTGCAAGTTCCGTGCCGGAACCTGCCCTTACGTCACCAACTGCAACTTCGCCCACTCCGTCGAAGAGCTCCGCCGCCCTCCACCCAACTGGCAGGAGATCGTCGCGGCTCACGAGGAGGAGAGGGCCAACACCGGCTCCGACACTGTTGTTCCCGCCAGGGAGGAGTTCCAGATTCCCATTTTGGGGTCTTCCAATTACTCCGGCGAGTCGCAGCGGTCTTACAAGGGTAGGCATTGCAAGAAGTTCTATACAGAAGAAGGGTGTCCCTATGGGGATAGTTGCACTTTTCTTCATGATGAGCAATCCAAGTATAGAGAAAGTGTGGCTATAAGCTTGGGCCCTGGTGGCTATGGTGGTGGAGGGGGTGGTGCCGGTGGAGGAGGGGGTGGTGGAGGTACTGGAAGTGGCGGTGGTGCCAGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGGAATGGGAATGGGCCTAATTCGAAGCCTTCGAATTGGAAGACGAGGATTTGTAACAAGTGGGAGATGACAGGGTATTGTCCTTTCGGAAACAAGTGCCATTTTGCTCATGGTGCAGCAGAATTGCATCGGTATGGAGGTGGGCTTGTAGAGGGAGAAAGTAGAGACCCTGCTTCTGCTGCTGCTCCCGACGCGAAGCAGGGAGGCGTACCTTCAAAATCTCCTGCTGATAATGTGGTTGCATCAGTTACCCCGGTTGCTCATTCGGATTCGATGTATCACATGGGAGTTCCTTCGTCGCAAAGGGCTACGATTGTGCTTCAGAGGCCTGGACAGAGAGCGCACCAGAAGTGGAAAGGTCCTGATAAAATCAGTAGAATATATGGTGATTGGATTGACGACATTGAATAG 1131 0.5393 MDYSRDGDVVQIIAGAANDPSVWATEEDYKFWNNEGDSTPSNSGGGSGYDQRKKARSSQDNNATTSSSNNNSNRAKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSVEELRRPPPNWQEIVAAHEEERANTGSDTVVPAREEFQIPILGSSNYSGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKYRESVAISLGPGGYGGGGGGAGGGGGGGGTGSGGGASAGAGAGAGAGGGGNGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGLVEGESRDPASAAAPDAKQGGVPSKSPADNVVASVTPVAHSDSMYHMGVPSSQRATIVLQRPGQRAHQKWKGPDKISRIYGDWIDDIE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00103 376 Gene3D - 246 284 - -
Adu05g00103 376 Gene3D - 79 113 - -
Adu05g00103 376 MobiDBLite consensus disorder prediction 58 73 - -
Adu05g00103 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 240 373 IPR045877 GO:0003729
Adu05g00103 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 206 IPR045877 GO:0003729
Adu05g00103 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 18 206 - -
Adu05g00103 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 240 373 - -
Adu05g00103 376 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Adu05g00103 376 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Adu05g00103 376 SUPERFAMILY CCCH zinc finger 80 113 IPR036855 GO:0046872
Adu05g00103 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 107 IPR000571 GO:0046872
Adu05g00103 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 278 IPR000571 GO:0046872
Adu05g00103 376 Gene3D - 150 200 - -
Adu05g00103 376 MobiDBLite consensus disorder prediction 214 252 - -
Adu05g00103 376 SUPERFAMILY CCCH zinc finger 250 283 IPR036855 GO:0046872
Adu05g00103 376 MobiDBLite consensus disorder prediction 32 73 - -
Adu05g00103 376 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Adu05g00103 376 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Adu05g00103 376 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Adu05g00103 376 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Adu05g00103 376 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Adu05g00103 376 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Adu05g00103 376 MobiDBLite consensus disorder prediction 34 48 - -
Adu05g00103 376 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00103 Adu-Chr5 1107865 1110865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00103 254 282 C3H Transcription Factor Family AT1G68200 62.069 2.62e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu05g00103 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00103 - - adu:107487192 652.129