Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00100 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATACAGTGTACCCTCCACCTCCTCCTCCTCCATTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTTCTCCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGCAGAACATGAAGAAGAAGTAACAAATGTTGAGATTTTGGAAGACAACCACAACCCTTCACTCCATGAGCCATGGCATGCCTCAACAACTGGTCTAGATGAGGCACTCATCAAGACCATAACTGTTTGCAAGTACAGGAAAGGCGAAGGACTCGTTGAGGTAACGGATTGTTCCGTTTGCCTCAGCGAGTTCCAAGATGGCGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCTTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCGCGCCACGCTTTTCACCTTCAATGCTGCAGTGCCATTTCATGCGCTGCCGCCGGCACCCCAGGTGTTGGAACTACCTTCTTCAGCAAGAAATGGAGGTTCTTCTGAGAATGTGGTTCATGTAGATGAAAATGTGGATAATGGAACAAGGGAGAGTGATGAGTTATTGGATGTGGTGTTGGACGAAGGTGCACTGAATGGTAACAGAGAAGTTCCAAAGACTAATAATGCATTCAGAGCTTTCAGTGACTTGGGGAATTTGAGGGGAAGGCATGCTGAGATTAGAGATGAGGATTACTATGAATCAATAAGAAGATCAGTGTCTATGGACCATTCCTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAATCATGATCAAGATTCAAATGAAGAAGTTGGCACTTCAAAGAGATCATCATCATCAATGGGTGAAAGTAGCAAATCAAGCTATAGAAGAAGAGTGTTGCATTGTGTTCTGAGTCCAATTTCAATGAAGAGATCATTCTCAAGTGGAAGATTCTCTCTTAGTGGAAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTTTATGA 1149 0.4378 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYTVYPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSAEHEEEVTNVEILEDNHNPSLHEPWHASTTGLDEALIKTITVCKYRKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHILCIDTWLKSHSNCPLCRATLFTFNAAVPFHALPPAPQVLELPSSARNGGSSENVVHVDENVDNGTRESDELLDVVLDEGALNGNREVPKTNNAFRAFSDLGNLRGRHAEIRDEDYYESIRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEVGTSKRSSSSMGESSKSSYRRRVLHCVLSPISMKRSFSSGRFSLSGRNGRGRQGILPL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00100 382 SMART ring_2 147 188 IPR001841 -
Adu05g00100 382 SUPERFAMILY RING/U-box 146 195 - -
Adu05g00100 382 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 372 - -
Adu05g00100 382 CDD RING-H2_PA-TM-RING 146 189 - -
Adu05g00100 382 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Adu05g00100 382 Pfam Ring finger domain 146 189 IPR001841 -
Adu05g00100 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Adu05g00100 382 MobiDBLite consensus disorder prediction 363 382 - -
Adu05g00100 382 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 372 IPR044675 -
Adu05g00100 382 MobiDBLite consensus disorder prediction 317 341 - -
Adu05g00100 382 MobiDBLite consensus disorder prediction 326 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00100 Adu-Chr5 1093355 1095042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00100 1 339 C3H Transcription Factor Family AT3G03550 41.595 2.13e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00100 - - adu:107487194 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00100 05 1093355 1095042 Adu05g00100 05 1093355 1095042 ECH