Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00067 ATGGGAAAAGAAGTGAGAAAAAGAAAGATAACTCAGAGAAGGCATATGGTCACTGATTCTTCTCCTCTTCAACAATGTCACCGATGCCACTCCGTCTCGTTCTCGGCAGAGAGCTGGTGGCTTCATCCGGGACCTCCATCGATGAAATTTAAGGTGGCTTCGACATGGACGAAGCTAGATCTACCTTCGTTTGGGGTGCCTGCCGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTTCAGCCCAATCTGCATTCTGTTCTGCAAGGTCTCTTTGGTACCTGGTCAAAGATATTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCACATGTCATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATCATGGATAATGTTGGTGGTGATCGGTTGGATTCAACGGGAACTGTAGGTAATACAAGAGGAGGAGGATTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATAATTGGAACATATTTCAAACTTCCAAGACTTATAATCTTAATGATGAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTCACAAAAGCCGTGAAATTCCTAGTACTAAGCTTTTATTGGTGGAGCAGCCTGGCAGAAATGGTTTTGGGAGCAAGTTTCCATTGGCAAGATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAACATGTGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAAGAAAAGGAAGTTATCTAATGATCCATCTAATCCTTCACAGTACCCCTTTACTATGGGGGCTGCTCCCCCTGCTGTCAATGCTCATGGCACTCGTCCTTCCGGCTTGAATACAGCATTTCCATTGCAAAAACGTCCTAATGTAGGTCATGGCCCAAATAAAACTCAGTTTATACATGACCAATTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAACACCTCAACTACAGTTTCTTCCACCTCAAATTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCTGGGCCAAAGTTTACATTTACATGGGGGAATCTTGCCACCTTTATGTTCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCAGTGACAAGTCAACCACCACCTACATATCTTGATTTGCTTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCGGACTGGATTTCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCAGGAGCTGTGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTGAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCAAGGTTGTTGGCTGCCGAGGAGACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTAAAAAGGATCAGAGTCGATGTGCACTATGTGGAGAGGGCTTCGATGAGTTTTACAGCTAG 1884 0.4432 MGKEVRKRKITQRRHMVTDSSPLQQCHRCHSVSFSAESWWLHPGPPSMKFKVASTWTKLDLPSFGVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTRGGGLNEWQQKRFSSDNWNIFQTSKTYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLVEQPGRNGFGSKFPLARWQDTEEEEFDWKHVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDPSNPSQYPFTMGAAPPAVNAHGTRPSGLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPISSNLQNHGQTPQLQFLPPQIPSSTQISHGSSLQGHGASISTPISNPLPDMLGQSLHLHGGILPPLCSSLPTAPSQMMSHPHADASVTSQPPPTYLDLLSSLVNHGVISVTNPPTGLDFIGTEFDPDILKVRHEGVISALYGDLPRQCRSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPRLLAAEETEEMKDEEELGVPAKKDQSRCALCGEGFDEFYS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00067 627 MobiDBLite consensus disorder prediction 300 330 - -
Adu05g00067 627 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 68 627 - -
Adu05g00067 627 SMART 558neu5 24 140 IPR006569 -
Adu05g00067 627 MobiDBLite consensus disorder prediction 370 397 - -
Adu05g00067 627 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 68 627 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Adu05g00067 627 ProSiteProfiles CID domain profile. 1 143 IPR006569 -
Adu05g00067 627 ProSitePatterns Zinc finger C2H2 type domain signature. 529 549 IPR013087 -
Adu05g00067 627 Gene3D - 52 142 IPR008942 -
Adu05g00067 627 MobiDBLite consensus disorder prediction 300 397 - -
Adu05g00067 627 MobiDBLite consensus disorder prediction 404 423 - -
Adu05g00067 627 Pfam CID domain 37 133 IPR006569 -
Adu05g00067 627 SUPERFAMILY ENTH/VHS domain 66 141 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00067 Adu-Chr5 704883 710769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00067 468 627 C2H2 Transcription Factor Family AT4G04885 59.627 2.05e-58 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu05g00067 CID 4.9e-07 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00067 K14400 - aip:107640327 531.176