Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g03372 ATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATCTGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATACACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGTCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAGTGGATGAGAACGAAGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATGTTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACTACACTACCTCCTCAACCTACATTTTTTACTTTAGACAAACCATCCATGGAAGGAGATCATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG 1125 0.4098 MASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADLGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHTHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEVDENEEGSLQSQTPEEESTSGGSENENDVNMDASLPLPPVTTTTTLPPQPTFFTLDKPSMEGDHYNLGHQNIHDSKNMLTML 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g03372 374 Gene3D - 14 115 IPR036431 GO:0003677
Adu04g03372 374 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Adu04g03372 374 SUPERFAMILY ARID-like 31 112 IPR036431 GO:0003677
Adu04g03372 374 SMART ARID_2 32 114 - -
Adu04g03372 374 Pfam HMG (high mobility group) box 205 272 IPR009071 -
Adu04g03372 374 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 121 324 - -
Adu04g03372 374 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 113 - -
Adu04g03372 374 SUPERFAMILY HMG-box 192 284 IPR036910 -
Adu04g03372 374 Coils Coil 254 281 - -
Adu04g03372 374 MobiDBLite consensus disorder prediction 293 343 - -
Adu04g03372 374 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 121 324 - -
Adu04g03372 374 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 113 - -
Adu04g03372 374 SMART hmgende2 204 273 IPR009071 -
Adu04g03372 374 CDD ARID_HMGB9-like 37 112 IPR045303 GO:0003677
Adu04g03372 374 MobiDBLite consensus disorder prediction 185 212 - -
Adu04g03372 374 CDD HMGB-UBF_HMG-box 205 269 - -
Adu04g03372 374 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 205 272 IPR009071 -
Adu04g03372 374 SMART bright_3 36 119 IPR001606 GO:0003677
Adu04g03372 374 MobiDBLite consensus disorder prediction 185 199 - -
Adu04g03372 374 Pfam ARID/BRIGHT DNA binding domain 39 112 IPR001606 GO:0003677
Adu04g03372 374 Gene3D High mobility group box domain 189 290 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g03372 Adu-Chr4 121822473 121824110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g03372 1 292 ARID Transcription Factor Family AT1G04880 48.883 5.23e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Adu04g03372 ARID 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g03372 - - cit:102613632 359.377