Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu04g03372 | ATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATCTGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATACACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGTCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAGTGGATGAGAACGAAGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATGTTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACTACACTACCTCCTCAACCTACATTTTTTACTTTAGACAAACCATCCATGGAAGGAGATCATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG | 1125 | 0.4098 | MASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADLGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHTHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEVDENEEGSLQSQTPEEESTSGGSENENDVNMDASLPLPPVTTTTTLPPQPTFFTLDKPSMEGDHYNLGHQNIHDSKNMLTML | 374 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu04g03372 | 374 | Gene3D | - | 14 | 115 | IPR036431 | GO:0003677 | |
Adu04g03372 | 374 | ProSiteProfiles | ARID domain profile. | 35 | 126 | IPR001606 | GO:0003677 | |
Adu04g03372 | 374 | SUPERFAMILY | ARID-like | 31 | 112 | IPR036431 | GO:0003677 | |
Adu04g03372 | 374 | SMART | ARID_2 | 32 | 114 | - | - | |
Adu04g03372 | 374 | Pfam | HMG (high mobility group) box | 205 | 272 | IPR009071 | - | |
Adu04g03372 | 374 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 121 | 324 | - | - | |
Adu04g03372 | 374 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 3 | 113 | - | - | |
Adu04g03372 | 374 | SUPERFAMILY | HMG-box | 192 | 284 | IPR036910 | - | |
Adu04g03372 | 374 | Coils | Coil | 254 | 281 | - | - | |
Adu04g03372 | 374 | MobiDBLite | consensus disorder prediction | 293 | 343 | - | - | |
Adu04g03372 | 374 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 121 | 324 | - | - | |
Adu04g03372 | 374 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 3 | 113 | - | - | |
Adu04g03372 | 374 | SMART | hmgende2 | 204 | 273 | IPR009071 | - | |
Adu04g03372 | 374 | CDD | ARID_HMGB9-like | 37 | 112 | IPR045303 | GO:0003677 | |
Adu04g03372 | 374 | MobiDBLite | consensus disorder prediction | 185 | 212 | - | - | |
Adu04g03372 | 374 | CDD | HMGB-UBF_HMG-box | 205 | 269 | - | - | |
Adu04g03372 | 374 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 205 | 272 | IPR009071 | - | |
Adu04g03372 | 374 | SMART | bright_3 | 36 | 119 | IPR001606 | GO:0003677 | |
Adu04g03372 | 374 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - | |
Adu04g03372 | 374 | Pfam | ARID/BRIGHT DNA binding domain | 39 | 112 | IPR001606 | GO:0003677 | |
Adu04g03372 | 374 | Gene3D | High mobility group box domain | 189 | 290 | IPR036910 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu04g03372 | Adu-Chr4 | 121822473 | 121824110 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu04g03372 | 1 | 292 | ARID Transcription Factor Family | AT1G04880 | 48.883 | 5.23e-91 | 279 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Adu04g03372 | ARID | 1.3e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu04g03372 | - | - | cit:102613632 | 359.377 |