Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g03343 ATGCTTATTCATCAGGGGAAAGTGCTTAAAGATGACACAACCCTGGAAGAGAATGAAGATGCTGAGAATAGCTTTGTGGTGATCATGTTATTTAAGGCAATAACTCAACCTGCAAGTTCTTTGCCTGCCACTTCAGTGCTATCCTCTACTTCGTCCGTGGGACAAGGAGTATCCAATCCTGAGAAAATTCCTGTTATGACTCCTGCTAGCCCTGCGGTGGTTACCGGTGCTCCGAGAAGCTCACCGGAAATATACTGCAACATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCCCAAGACACGGTTGCTGATGTGAAGAGAAATATAGAGAGAGAACAAGGTGCTGAAGTTTATCCAGCTGCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATCATGCTATCTAAGAGCAAGGTATCATCAGGTGAAGCCTCAACTGCATCATCTGCATCTGCAAAACAGGCAGCTGAACCGGCGAGTTCTTTGCCTCCCACTTCATTGCCATCCACAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTGCCAGTGATGTGGCCGGCATTTATGGCCAAGCAGCATCAAACCTCATTTCAGGAAGCAATTTAGAATCGACTATTCAACAGATTCTAGACATGGGGGGAGTACCAGCAGTTGCCAGAACCCCCGCTATTGGGCAGGCAGCAAACCCTTCAGGTGAGGCTCAGGGTCAAGCTCAGGTTGCACCTACTGGTGGGCCCAACACCAACCCACTCAACCTCTTTCCCCAGGGTATTCCCGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTCCTGCGGAACAGTCAACAGTTCCAAGCCCTGAGAGCGATGGTGCAAGCAAATCCCCAGATTTTGCAGCCCATGCTTCAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTTATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGAGTTGGCTTCTGCAGTGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGACCTGGCAGCCAACTATCTTTTGGATCACCTGAATGAATTTGAAGACTAA 1302 0.4662 MLIHQGKVLKDDTTLEENEDAENSFVVIMLFKAITQPASSLPATSVLSSTSSVGQGVSNPEKIPVMTPASPAVVTGAPRSSPEIYCNMKINVKTLKGTHFEIQVQPQDTVADVKRNIEREQGAEVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTASSASAKQAAEPASSLPPTSLPSTTSQPPASTVGQGVSNSEQNPVTTPASDVAGIYGQAASNLISGSNLESTIQQILDMGGVPAVARTPAIGQAANPSGEAQGQAQVAPTGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSELASAVPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEDLAANYLLDHLNEFED 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g03343 433 SUPERFAMILY Ubiquitin-like 88 168 IPR029071 -
Adu04g03343 433 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 1 70 - -
Adu04g03343 433 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 70 - -
Adu04g03343 433 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 88 254 - -
Adu04g03343 433 Gene3D - 301 366 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu04g03343 433 SUPERFAMILY UBA-like 371 430 IPR009060 GO:0005515
Adu04g03343 433 Pfam XPC-binding domain 310 365 IPR015360 GO:0003684|GO:0006289|GO:0043161
Adu04g03343 433 ProSiteProfiles Ubiquitin domain profile. 88 163 IPR000626 GO:0005515
Adu04g03343 433 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 255 432 - -
Adu04g03343 433 CDD Ubl_Rad23 88 161 - -
Adu04g03343 433 SMART CBM 308 351 IPR006636 -
Adu04g03343 433 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 387 427 IPR015940 -
Adu04g03343 433 Gene3D - 381 428 - -
Adu04g03343 433 SMART ubq_7 88 162 IPR000626 GO:0005515
Adu04g03343 433 MobiDBLite consensus disorder prediction 176 223 - -
Adu04g03343 433 MobiDBLite consensus disorder prediction 268 289 - -
Adu04g03343 433 PANTHER UV EXCISION REPAIR PROTEIN RAD23 88 254 - -
Adu04g03343 433 SMART uba_6 389 426 IPR015940 -
Adu04g03343 433 SUPERFAMILY Ubiquitin-like 2 42 IPR029071 -
Adu04g03343 433 SUPERFAMILY XPC-binding domain 307 369 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu04g03343 433 MobiDBLite consensus disorder prediction 176 222 - -
Adu04g03343 433 Gene3D - 84 167 - -
Adu04g03343 433 PRINTS DNA repair protein Rad23 signature 415 430 IPR004806 GO:0006289
Adu04g03343 433 PRINTS DNA repair protein Rad23 signature 336 358 IPR004806 GO:0006289
Adu04g03343 433 PRINTS DNA repair protein Rad23 signature 400 414 IPR004806 GO:0006289
Adu04g03343 433 PRINTS DNA repair protein Rad23 signature 383 399 IPR004806 GO:0006289
Adu04g03343 433 MobiDBLite consensus disorder prediction 266 289 - -
Adu04g03343 433 Pfam Ubiquitin family 90 163 IPR000626 GO:0005515
Adu04g03343 433 Pfam UBA/TS-N domain 388 424 IPR015940 -
Adu04g03343 433 PANTHER UV EXCISION REPAIR PROTEIN RAD23 255 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g03343 Adu-Chr4 121549844 121556657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g03343 88 161 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 2.36e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g03343 K10839 - mnt:21392005 423.705