Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g03292 ATGGATCCACAACTCAAACCCCAAACCCTAAACTCCACCAGTTTATTCCTTGCTGCCACAACAGCCACCACTCATTCCGAACAACCACCACATTCACTCTCCCTCACCACCGTTCCTTCCACCGTACCACGCTCCAAGCTCATCCCAAACACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGACACAGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACTGGTCTCTCCAATTCTTGGTCCCGCGGCATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCGAACGCTTCCTTGTACCCCTTCCCCTTTGCCAGCCCGTTGAAATCGACGGCGCGGAGGTCACGCTGGTCGACGCGAACCACTGCCCTGGCGCGGTCCAGTTCCTATTCAAGGTCCCAACAAAAGAAGAAGGGAAGAAATTCGAGAGGTATGTTCACACTGGCGATTTCAGGTTTTGTAATTCAATGATTTTGGAGCCTGCAATTCTTGATTTCGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTGTTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGTGTAGTCAAGAGGGTTATTAGTGATTGTGGTGGTGATGGTAGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGGTTGAACTTGCACGGAGAGTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTCTTGAGGGTGCTTGGGTATGGAGAGAGTGGTGTGTTTACCGAGGACAGTTCAGAGAGTAATATTCATGTTGTTGGCTGGAATGTATTGGGGGAGACATGGCCGTATTTTAAGCCGAATTTCGTAAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCCAAGGTTGTGGGATTTGTGCCAACCGGATGGACTTATGAAGTAAAGTGCAATAGGTTCCCAGTGAGGTCCAAGGATTCGTTTGAGATTCATCTCGTGCCGTATAGCGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAGGCGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAAAGCGACAGTAAGCATGCTGACAAAATGAGGAAGTATTTTGCTTTATTGGTTGATGAGACGGCCAACAAGCATGAATTTCTAAAGGGATTTCACCGTGCCACAGGCGACACAGATTTCTTGGTTGAGAAGGATGTTAATGATGGTCAGAAGCCAGGAAAAAACATGGAGGAAGGAATCAAGCCATCTGAGTTGGATGGTGAGGAAAGTACAATTCCGGATGTTGCTGCTAGTGTGCCCTCTTCTACCGGGGAACCGTGTACAGAAGGTGTTACCTTACTAACTGATGAAGAAAAAAAGAAAATGATTGAAGAACTTGGTAATTGTTTGCCGACATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGCTTCTAATTTTTATGAACGTGAAACTGAATTTCACAAGCAAGCGTTTTCTTGTCAAACTTCTTCTTTGGTGTCCAAGTGCAGCTCGCTAAATGACATAGATTCTCCTTCAAAAGCTTGCCTGAATTCAAGCAGCACTACCAAAAATATCGATGTTTTTCCAAGCCAGGACTCTACTAAACTAACTATCTTGAAGCATACAGTTCTAAGTCAAGCTTCCTCTGCCAAAAGGAATAAAAGTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAGTCACAGTCACAATCAAGTGATCCAAAGCAGTCCACCATAACAAAATTCTTCAGCAAAGTATTGCCTGTGAAGCCTAGTGTTGCTCAGTCTGATCGTTCTGAATTGATGATTGGCGCAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGAAATCTTGGTGAAAAGGAAATTTCAGTTCAAGCAGAGTGTAAAATTGATAGCTCTTTAGAGAAGAATTGTGTGTTACATGAATTGAAAGGTATTCCTGACACCACTATGAAGAGAAATCATGTAACTCTACCACTTGAGAAATACAATCCTAAAGAGCATGCGTGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTGGAGGATGAGAAAGGAAAGATTAAGGCTTCTTCAATGATATGCAATACGTTCCGAAGTTTGCTGGCCTTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCGGCAGACCATGAAAAAATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGCGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCAACACCACTTCTGATTAAGGATGTTTTCTCTGCACTGCAAAAGATAAGTTTACAAACAGGCCATGGAAGCACATCTCGGAAGAAAGGCATTATCATTAGTCTCATGCGTTCCTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTAAACCTCAGATTATATCTTTTTCTTCTTTCCTTTTCTCCTCCCACTTTTGTGTGTGTGTTTATATGTTTGCTACAGGTCCTTTCTGTGGAAATTGTTGAAGCATATAACATAATTCCGAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAACGATCACCAATGGCATTCCCAAAGCATTGAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGATCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGACATAATTAAGGAATTCTGCAAGCCTGTTGCATCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGAAAAAATGGAATTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGTAAAGGAAGCAAAGATACTCTAGTTACTACAGAGAGCATAAAGGTGGATATTTGCATATTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGGGTTTTCCTCTTCGCACAAGACGGAAATATCTAAAGGATTTGTTATGTGATGAAAAACCAGGGTATTTTGAATATGCAAAGGAAATAACAATTGAAGCAGACAAGGCTTGCGAAACTTGTAAAACCACATTAACCAAGATAAATGCTTTCTTGGAAGATGCTCTTCGTTCTTCCTGTGAAGGAATTATGGTGAAAACATTGGATGTAGATGCTGGTTATTCTCCGTCAAAGCGTTCTGATAAATGGTTAAAGGTCAAACGAGATTATGTCGAAGGTTTAAATGATTCTCTTGATTTGGTGCCCATTGGAGCTTGGCATGGAAATGGAAGGAAGGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGTGTGATGTCTGGGTTCTCAGATTCGTTTTACAAAGAGATGAAAGAATTCTTCTCTGAGGACAACGTCTTATCCAAAAAGCCGCTGTATTATCGAACAGCAGAGGAGCCCGACATGTGGTTTTGTCCGCAACTTGTTTGGGAGATACGAGGTGCAGACTTCACGGTGTCCCCTGTTCATCATGCAGCGATCGGTTTAATTCATCCGACTCGGGGCATCTCAATACGGTTTCCGAGATTTATTAGCCGTGTGTTGGATAGGAACCCAGAAGAGTGTACTACAGCAGCAGATATTGTTGATTTGTTTAATTCTCAGACAAGGAAGATGGATGTCACAGCTGAAGATTGA 4008 0.4259 MDPQLKPQTLNSTSLFLAATTATTHSEQPPHSLSLTTVPSTVPRSKLIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSNSWSRGIVFCSATTASLLQRILGVPERFLVPLPLCQPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKKFERYVHTGDFRFCNSMILEPAILDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVKRVISDCGGDGSGVLFLVATYVIGKEKILVELARRVKRKVHVDARKMEVLRVLGYGESGVFTEDSSESNIHVVGWNVLGETWPYFKPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKCNRFPVRSKDSFEIHLVPYSEHSNYEELREYVKFLKPRRVVPTVGLDVEKSDSKHADKMRKYFALLVDETANKHEFLKGFHRATGDTDFLVEKDVNDGQKPGKNMEEGIKPSELDGEESTIPDVAASVPSSTGEPCTEGVTLLTDEEKKKMIEELGNCLPTWVTRSQMLELISISGSNVVEAASNFYERETEFHKQAFSCQTSSLVSKCSSLNDIDSPSKACLNSSSTTKNIDVFPSQDSTKLTILKHTVLSQASSAKRNKSSGSKPNKKVKVKAKSQSQSSDPKQSTITKFFSKVLPVKPSVAQSDRSELMIGAKGDVNKALDIYYCNSGNLGEKEISVQAECKIDSSLEKNCVLHELKGIPDTTMKRNHVTLPLEKYNPKEHACWKDGQPAPYLHLARTFSLLEDEKGKIKASSMICNTFRSLLALSPADVLPAVYLCTNKIAADHEKMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISLQTGHGSTSRKKGIIISLMRSCREKEIKFLVRTLVNLRLYLFLLSFSPPTFVCVFICLLQVLSVEIVEAYNIIPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLATITNGIPKALNLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKEFCKPVASTFIIDAEVVGIDRKNGIRIMSFQELSSRGKGSKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRTRRKYLKDLLCDEKPGYFEYAKEITIEADKACETCKTTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYKEMKEFFSEDNVLSKKPLYYRTAEEPDMWFCPQLVWEIRGADFTVSPVHHAAIGLIHPTRGISIRFPRFISRVLDRNPEECTTAADIVDLFNSQTRKMDVTAED 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g03292 1335 Gene3D - 197 351 - -
Adu04g03292 1335 Pfam DNA ligase N terminus 723 881 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g03292 1335 MobiDBLite consensus disorder prediction 425 446 - -
Adu04g03292 1335 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 6 639 - -
Adu04g03292 1335 SUPERFAMILY Nucleic acid-binding proteins 1181 1325 IPR012340 -
Adu04g03292 1335 Gene3D - 963 1176 - -
Adu04g03292 1335 MobiDBLite consensus disorder prediction 583 615 - -
Adu04g03292 1335 Pfam ATP dependent DNA ligase C terminal region 1198 1301 IPR012309 GO:0003910|GO:0006281|GO:0006310
Adu04g03292 1335 Pfam ATP dependent DNA ligase domain 952 1172 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu04g03292 1335 ProSiteProfiles ATP-dependent DNA ligase family profile. 1063 1210 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu04g03292 1335 CDD Adenylation_DNA_ligase_I_Euk 943 1175 - -
Adu04g03292 1335 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 908 1174 - -
Adu04g03292 1335 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Adu04g03292 1335 MobiDBLite consensus disorder prediction 425 448 - -
Adu04g03292 1335 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 976 984 IPR016059 GO:0003909
Adu04g03292 1335 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 374 IPR036866 -
Adu04g03292 1335 Gene3D DNA ligase/mRNA capping enzyme 981 1112 - -
Adu04g03292 1335 Pfam DNA repair metallo-beta-lactamase 271 374 IPR011084 -
Adu04g03292 1335 Gene3D - 1177 1334 IPR012340 -
Adu04g03292 1335 CDD OBF_DNA_ligase_I 1181 1324 - -
Adu04g03292 1335 PANTHER DNA LIGASE 6 639 - -
Adu04g03292 1335 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 781 1322 IPR000977 GO:0003910|GO:0005524|GO:0071897
Adu04g03292 1335 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 704 935 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g03292 1335 Gene3D - 48 373 IPR036866 -
Adu04g03292 1335 Gene3D - 904 954 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g03292 1335 Gene3D - 700 888 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g03292 Adu-Chr4 120998366 121005724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g03292 708 1325 Core DNA Replication Machinery Family AT1G08130 37.304 1.28e-152 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g03292 - - aip:107635689 2438.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g03292 04 120998366 121005724 Adu04g03292 04 120998366 121005724 ECH