Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g03225 ATGACCATGGCAAATTGCTTGATGCTACTATCTAGAGGAAGTGATCAATTTAAGGCAACATATTCTTCAAGTTTTTCTTCAAATTATAACAACAACGACAACAACAACAACAACAACCGAGTTTTCGAGTGCAAAACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGAGGGCATAGAGCTAGTCACAAGAAGCCAAGGTTAATGGATGATCATGGTGGCAAATTGGAAGAACAACAACAACAACAATTGGAAGCTCAAAAGCCTAAGACTCATGAATGTTCCATTTGTGGCTTGGAATTTGCAATTGGTCAAGCATTAGGTGGACATATGAGGAGGCATAGAGCTACTTCAAATTTGAATCATCATAATGGAAGATTATTATTGCATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTACTATGAGTAGTAGTAGTGGTGGTAGCACTAGCCTTGAGTCTTCATCACCAAATGGGATATCAAAGAATAATAATAGTAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATTGGAAATTGTTTGTGTTGA 597 0.3417 MTMANCLMLLSRGSDQFKATYSSSFSSNYNNNDNNNNNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMDDHGGKLEEQQQQQLEAQKPKTHECSICGLEFAIGQALGGHMRRHRATSNLNHHNGRLLLHNNNNNNNNNNNNNSTMSSSSGGSTSLESSSPNGISKNNNSKRVLVLDLNLTPFENDLEILKIGNCLC 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g03225 198 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Adu04g03225 198 SUPERFAMILY beta-beta-alpha zinc fingers 40 115 IPR036236 -
Adu04g03225 198 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Adu04g03225 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Adu04g03225 198 SMART c2h2final6 42 64 IPR013087 -
Adu04g03225 198 SMART c2h2final6 93 115 IPR013087 -
Adu04g03225 198 MobiDBLite consensus disorder prediction 125 169 - -
Adu04g03225 198 PANTHER ZINC FINGER PROTEIN ZAT5 1 189 - -
Adu04g03225 198 PANTHER ZINC FINGER PROTEIN ZAT12 1 189 - -
Adu04g03225 198 Gene3D Classic Zinc Finger 16 119 - -
Adu04g03225 198 MobiDBLite consensus disorder prediction 56 88 - -
Adu04g03225 198 MobiDBLite consensus disorder prediction 64 79 - -
Adu04g03225 198 Pfam C2H2-type zinc finger 41 67 - -
Adu04g03225 198 Pfam C2H2-type zinc finger 93 117 - -
Adu04g03225 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g03225 Adu-Chr4 120309296 120309892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g03225 3 194 C2H2 Transcription Factor Family AT2G28710 39.583 1.43e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu04g03225 zf-C2H2_6 1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g03225 - - adu:107486331 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g03225 04 120309296 120309892 Adu04g03225 04 120309296 120309892 ECH