Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02977 ATGGTGGTTATGATAATGGGTTCAGAGAGAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAGGACAAGTTGCTCACTGAATATGTCACCTTGCATGGGGAGGGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAATTATTTGAGGCCTGGTCTCAAGAAGGGTCAATTAACACCACTGGAAGAAGGAATAATATTTGAATTGCATGCTATTTTGGGAAACAAGTGGTCAACAATAGCAAGGTACTTGCCAGGTAGAACTGATAATGAGATCAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCATAACAAGAAGCTAAAAGAGAGAAGATCAAAGGTCACAAAAGAGCAAGTAATAATGGAGGACACCAACAAAAGTAATAATAATGAAAATACCAAATCCTATGATGATGAGACAAAAGAAAACTACTACAATGATCAACACAATAATATGGGGTTTATTTACCCTAATAATAATAATCCAACAATGTTAGAGCAGCAACAAAGCTTCCCTTTGATGCACCAAGATTATTTGTCATCACCTTCATGGCCAGACACTACAACAGCAGATTATCATGCCTTGTGGTTTAGTTTATGGGACTTTGATGTACCACAGGGCTTTGAAGAACATGTTAACAACCTCACCAAATATGTGCTCCCAAACCAAGCTACCTTTGGTGATGtttttcacaatacttttttagtttga 762 0.3832 MVVMIMGSERGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEGIIFELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNKKLKERRSKVTKEQVIMEDTNKSNNNENTKSYDDETKENYYNDQHNNMGFIYPNNNNPTMLEQQQSFPLMHQDYLSSPSWPDTTTADYHALWFSLWDFDVPQGFEEHVNNLTKYVLPNQATFGDVFHNTFLV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02977 253 Gene3D - 13 66 - -
Adu04g02977 253 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu04g02977 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Adu04g02977 253 CDD SANT 16 61 IPR001005 -
Adu04g02977 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Adu04g02977 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Adu04g02977 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu04g02977 253 Gene3D - 69 167 - -
Adu04g02977 253 CDD SANT 71 112 IPR001005 -
Adu04g02977 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu04g02977 253 SMART sant 66 114 IPR001005 -
Adu04g02977 253 SMART sant 13 63 IPR001005 -
Adu04g02977 253 PANTHER MYB TRANSCRIPTION FACTOR 5 232 - -
Adu04g02977 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu04g02977 253 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02977 Adu-Chr4 118015002 118016716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02977 11 220 MYB Transcription Factor Family AT3G30210 53.555 1.02e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu04g02977 Myb_DNA-binding 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02977 K09422 - gmx:100785540 280.026