Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02885 ATGGACTACACCACTTGGCCTGAATTTCAGCATGCCCAAGCCCAAACCCCAACACTACCCTCTTCATCTTCATTATATTCATACTCATACCCTCCTCTTCCATCTTCATCATCGTACACCGCCAATTTCGTCCCTTACCCTCAAAACCCTAACCCTCCTTCTTCAATTCCTCCCAACACTGTTTTAGAACCTGTGGTCAACCCTCCGGGTGTTGATTCCTATGTTCCCCCATTGCCATTGCCAACAACCCAAGCTGTTGGTGGTCATGAACAACTTCTTCCCCAAAATTACTCATACACCCAAACCCAAACCCAAATTGTGGGTACTGACCCTAATTCGTTGGTGGCTTCTTCTGGGTACTACTATGATCCCAATGCTCAAAATTGGGGTGATACTGCTGGAGGAGCTGTTATGCAATATGGTTCTGACCCTCTTGCTTATGGAGATATCTCTATGGCATCAAATGGCACAGAACAGTTGGCTGTTGCAAATACTAATCCCGCTGCATGGTGGACCAATACAGCTATGCAAGTTCAAACACAAGCGCAAGCACAAGCACAACCTCTTGGCAATAACAAATGGAAGCAGCTGCTGAAGAAGAAACCTAGAACTGTGAATGTTCAACCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAAAGAGGTATTGGATCAACATAAATTAGGAAAGAAGCACAAGAAGAATGTAGAGAAACTAAGAGAATTATTAAGACCCCCCCAGCCACAAGTCCATCCACCGGCCGATGGGTCATCTAATCCGGTTATAGGGCCACAATTGTGGAATAAGTGTAAGAGGAAATCAATTGAAACTCCAGAGGATTTGGAGAAAAAGAAGAAGAAAGTTCTGGAAGGAGGAGCAGCGGCCGCAGCAGTTAAAGTATGTTCTATATGTAATGTGGTATGTAATAGTGAAACAGTTTATAATTTCCACCTTCGCGGACAAAAGCATGCTGCCATGTTGAAGAAAGCATCTGAAAATATACTATCCAATGGAAAATGA 1026 0.4376 MDYTTWPEFQHAQAQTPTLPSSSSLYSYSYPPLPSSSSYTANFVPYPQNPNPPSSIPPNTVLEPVVNPPGVDSYVPPLPLPTTQAVGGHEQLLPQNYSYTQTQTQIVGTDPNSLVASSGYYYDPNAQNWGDTAGGAVMQYGSDPLAYGDISMASNGTEQLAVANTNPAAWWTNTAMQVQTQAQAQAQPLGNNKWKQLLKKKPRTVNVQPAYCEVCKIDCTSKEVLDQHKLGKKHKKNVEKLRELLRPPQPQVHPPADGSSNPVIGPQLWNKCKRKSIETPEDLEKKKKKVLEGGAAAAAVKVCSICNVVCNSETVYNFHLRGQKHAAMLKKASENILSNGK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02885 341 MobiDBLite consensus disorder prediction 1 24 - -
Adu04g02885 341 PANTHER - 45 333 - -
Adu04g02885 341 Gene3D Classic Zinc Finger 196 244 - -
Adu04g02885 341 PANTHER ZINC FINGER RNA-BINDING PROTEIN 45 333 - -
Adu04g02885 341 SUPERFAMILY beta-beta-alpha zinc fingers 300 331 IPR036236 -
Adu04g02885 341 SUPERFAMILY beta-beta-alpha zinc fingers 206 242 IPR036236 -
Adu04g02885 341 SMART ZnF_U1_5 298 332 IPR003604 GO:0003676|GO:0008270
Adu04g02885 341 SMART ZnF_U1_5 207 241 IPR003604 GO:0003676|GO:0008270
Adu04g02885 341 SMART c2h2final6 301 325 IPR013087 -
Adu04g02885 341 SMART c2h2final6 210 234 IPR013087 -
Adu04g02885 341 Pfam Zinc-finger of C2H2 type 211 234 - -
Adu04g02885 341 Pfam Zinc-finger of C2H2 type 302 325 - -
Adu04g02885 341 Gene3D Classic Zinc Finger 275 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02885 Adu-Chr4 116950724 116952307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02885 212 341 C2H2 Transcription Factor Family AT5G61190 30.405 3.29e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02885 - - adu:107486664 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02885 04 116950724 116952307 Adu04g02885 04 116950724 116952307 ECH