Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02872 ATGGGGTTGAAATTTACAAAGCAGGGGCCACAAAAAGTTGATGACTTGAGTTTACAGAATCACATGATCAATTACCTTACCAAGAATTTTATTCGAAACTTGGTATCTAAGCAACGGAGACGGATGCTCATTGCCGGCTATGATCTTGACATGACATACATCACAGATAGAATATTGGCAATGTCATTTCCTGCGGAACGAATGCGAGCAGTGTATCGAAATCCTCTATGGCAGGTGAAATCTGTGTTGGACATGACACACCATGAACATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCGGCAAACTTTCATGGACGTGTCGAAGCATACCCTTTCGATGATAACCATGTACCGCCCCTTGAAATGATCAAAGATTTTTGTGAAAGTGTGCATTCATGGCTATCAAGTGATCCAAGAAATATTGCTGTCATTCATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTGTGTTCATACCTAACTTATTCTGGCATGACAGCAGATGAGGCTCTTCAATTGTATGCAGAGAGAAGGACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGCCGTTATGTAAGGTACTTTGAAAGTGTACTTTCTACCCCTAGGGGCAGAGTGAGCTTGCCTCAACCATGTAGCAGAGAATTGCGCCGAATTCGCCTTTATGATACAGTTAACATCTGTGCAATATTCTTTGTGATTTCAGAGCTGCAGGAGGAGGCTCCTAACCAGTGCTATCGTCCGCCGGTGGAAATTTTCCGAGGGTGCTGCAGAGAGATTAAGAAAGGCTATCAGAGAACCAACAGTCCTCGCTACTATCTTTCTTATATCGAAGAAGAAAATGAAGATGGAACACAATCAGAACAAGAAGAACCTCGGATTGTTGTTCAAATGGACACAGAGAGTCCTGCAATATACAAGAAAACCTGTTTGGATTATTATTTCGACCAACCGATCCTATTAACTGGAGATGTACGTGTGATATTCTATGAGAAAATGATAGGAGGCCGTCTCTTCTATTGTTGTTTCAATACAGCTTTTGTTAAGAACAGCATGGTACAGCTGGGAATACAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGAAGTGATTTTAGCTTGGAATTACTGTTTGGTCCTGCCAATTCATCAAGTGTATCCAATAGTGACAATGCTAGTATTGTTTCCTTGTGA 1224 0.4093 MGLKFTKQGPQKVDDLSLQNHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMTYITDRILAMSFPAERMRAVYRNPLWQVKSVLDMTHHEHYKIYNLCIEESYDPANFHGRVEAYPFDDNHVPPLEMIKDFCESVHSWLSSDPRNIAVIHCMAGKGRTGLMVCSYLTYSGMTADEALQLYAERRTTNNEGVSIPSQRRYVRYFESVLSTPRGRVSLPQPCSRELRRIRLYDTVNICAIFFVISELQEEAPNQCYRPPVEIFRGCCREIKKGYQRTNSPRYYLSYIEEENEDGTQSEQEEPRIVVQMDTESPAIYKKTCLDYYFDQPILLTGDVRVIFYEKMIGGRLFYCCFNTAFVKNSMVQLGIQDLDKVGKKGRSICGSDFSLELLFGPANSSSVSNSDNASIVSL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02872 407 Gene3D Protein tyrosine phosphatase superfamily 26 209 IPR029021 -
Adu04g02872 407 ProSiteProfiles C2 tensin-type domain profile. 235 391 IPR014020 -
Adu04g02872 407 CDD PTP_PTEN 50 203 IPR045101 GO:0016791
Adu04g02872 407 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 390 IPR035892 -
Adu04g02872 407 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Adu04g02872 407 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 395 - -
Adu04g02872 407 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 207 IPR029021 -
Adu04g02872 407 Pfam C2 domain of PTEN tumour-suppressor protein 314 388 IPR014020 -
Adu04g02872 407 Pfam Tyrosine phosphatase family 142 185 IPR026893 GO:0004721
Adu04g02872 407 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Adu04g02872 407 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Adu04g02872 407 Gene3D - 267 393 - -
Adu04g02872 407 SMART PTEN_C2_2 216 390 IPR014020 -
Adu04g02872 407 PANTHER BNAC03G16750D PROTEIN 1 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02872 Adu-Chr4 116754338 116757870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02872 1 393 Protein tyrosine phosphatase (PTP) family AT5G39400 65.664 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02872 K01110 - gmx:100809938 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02872 04 116754338 116757870 Adu04g02872 04 116754338 116757870 ECH