Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02867 ATGAAACTGATCCGATCCATGAGAAGTTCCAGTATTGGAAAGAAAGAACATATCGGCATCCATGACGCTCTTGTCATAAGGTCCCTTGAATCCCCAATTGAGATGAGTTTAGTGGGAAATCGGGATAGAGATGACAAGAGGTATTGGTCCCTTGTTTCGCGCAGCTTTAGTAGTTCTTCTACTTCCAGGATAAACTGCAAGGAAGGTGAATTCATGAGAGCTGAAGAGGAGGTTTTGAGCGAGCTAGAGAAATGGTTTGTTTTTCACTATAATATTATGATAAGGGGGCTTTGTAAAGAGAGTTTGATTGACGAAGCAGTGACCTTGTTTTCAAAAATGAAAGGAAATGGTTGTCTTCCAAATGCTGTAAGTTATGAAACAGTTATTCGAGCACTTCTTGCTAGAGATGAGAATGAGCAAGCACTAAAGCTTCTTACTGAAATGATCAGTAAAGATGGTACAGAATTGTGCTATGCTCTTATGGCTTTTAGTTCCTTAGAATGGATACGAGTGGCTGTTTTTGATCTTGACGAAGAAGACACTCCAAGAAAAGATAGTGAGAAAAAGACTAAAGAAAAGAAGGCCACTGTAAACGAAGAGAGTAAAGGAGGGAAGGAATCCGGTGTTGCTGCACTTCCCTGCATTGATAAGCTCAGAGACGATCTTTCTTGCACGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACCCCTTGTGGTCACAGGCTTAAGTTTGAAATGACAGCTCCAACAATTAAGTGTTTCTTAAGACGGTTCATTCGTGCAGCTCAAGGAGTTAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAAGTACATTGCCGAATTGTCTTTGTTGGAGTCCAGTATGCCTTGTTATGCTCCGTCACTAATAGCTGCTTCTGCAATTTTTCTAGCCAAGTTTATACTCTCCCTCTCAACCAAACCATGGAATGCTACATTGAAGCACTATACACAATACCAGCCTTCAAATTTGTGTAGTTGTGTAAGGGATCTCCGTCTATTTTGTTGCAACAATCCTAACTCCAATTTGCCTGCAATTACGGAAAAATATAGTCAGCACAAGTACGAAAATGTGGCCAAGAAGTATTACCCTCCCTCAATACCTTCAGAATATTTTCAGAATTGA 1152 0.4071 MKLIRSMRSSSIGKKEHIGIHDALVIRSLESPIEMSLVGNRDRDDKRYWSLVSRSFSSSSTSRINCKEGEFMRAEEEVLSELEKWFVFHYNIMIRGLCKESLIDEAVTLFSKMKGNGCLPNAVSYETVIRALLARDENEQALKLLTEMISKDGTELCYALMAFSSLEWIRVAVFDLDEEDTPRKDSEKKTKEKKATVNEESKGGKESGVAALPCIDKLRDDLSCTICLEICFEPSTTPCGHRLKFEMTAPTIKCFLRRFIRAAQGVSETPSLQLECLTKYIAELSLLESSMPCYAPSLIAASAIFLAKFILSLSTKPWNATLKHYTQYQPSNLCSCVRDLRLFCCNNPNSNLPAITEKYSQHKYENVAKKYYPPSIPSEYFQN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02867 383 Pfam PPR repeat family 87 132 IPR002885 -
Adu04g02867 383 MobiDBLite consensus disorder prediction 181 207 - -
Adu04g02867 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 243 IPR013083 -
Adu04g02867 383 Pfam Cyclin, C-terminal domain 250 369 IPR004367 -
Adu04g02867 383 CDD CYCLIN 248 340 IPR013763 -
Adu04g02867 383 MobiDBLite consensus disorder prediction 181 201 - -
Adu04g02867 383 SMART cyclin_7 254 342 IPR013763 -
Adu04g02867 383 SMART Cyclin_C_2 250 373 IPR004367 -
Adu04g02867 383 TIGRFAM PPR: pentatricopeptide repeat domain 90 122 IPR002885 -
Adu04g02867 383 Gene3D - 244 376 - -
Adu04g02867 383 Gene3D Tetratricopeptide repeat domain 49 165 IPR011990 GO:0005515
Adu04g02867 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Adu04g02867 383 PANTHER CYCLIN-A1-1 242 382 - -
Adu04g02867 383 SUPERFAMILY Cyclin-like 250 375 IPR036915 -
Adu04g02867 383 SUPERFAMILY RING/U-box 213 243 - -
Adu04g02867 383 PANTHER CYCLINS 242 382 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02867 Adu-Chr4 116678207 116682475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02867 243 383 Core Cell Cycle Gene Families AT1G44110 63.121 2.77e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02867 K06627 - gmx:547781 233.802