Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02854 ATGGGTTGTGTTAACTCCAAGAAGGCTCGTGCCGGAGATCCATCTGCTTCGCCGGCCGACGATGGCGTAGCATACGTCAAATCCTATTCGCGGAGAGGCAGACTCGCCTCCGGTCGCGTTGGGGCGGTGGTGTCTTCTTCCCCCGCTTCCAGGGGCCGTTCTTCGACATCCGCGGTGGTTGCCGGTGAGGCTGCGGAGGTCCGGGAAGGAGGTGGTGACGCAAAAGGCGACGAGGCGGTGGCTGCGGAGAAGCTTGAGAAGAAGAGTAGTAAGGATATGGTGGTGAGGGAGAATGGGAATGGGAATAATGGTGGGAGAGGGAGCTCGAGGCAAATTGGGGCATTGAATGCGAGGATTGGTTTGTCGCATAGGTTTGTGGAAGCTGAAAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGTGAAGCCATTCACGGTATGGTTCCTCTCAAAAGTGATGCTTTTGAGAAATTGGACAAGATTGGACAAGGTACATACAGCAGTGTTTTCCAAGCACGTGAAGTTCATAGTGGGAGGATGGTTGCCCTGAAGAAGGTGCGATTTGACAATTTCCAACCGGAGAGTATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACGTCATGAAATTGGAGGGCATAATCACTTCCCAACTTTCTCACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCGGACATCAAGTTCAGTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATGGAGCATTGTCACCTTAGAGGTATTATGCATAGAGACATTAAAGTGTCCAATATATTAGTGAACAATGATGGTGTTCTCAAGATTGGAGACTTTGGATTAGCAAATACACTTAGCCCAAACAACAAGAACCCTTTAACAAGTCGTGTGGTGACTCTTTGGTATCGCGCTCCTGAGCTCTTGATGGGTTCAACGAATTATGGAGTTTCAGTGGATCTATGGAGTGTCGGCTGCGTATTCGCAGAACTTTTCCTGGGAAAGCCAATCCTTAAGGGAAGAAATGAGGTTGAACAATTGCACAGAATCTTTAAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAACCGCAGACTACCTACGAAAGCTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTTTACTGTCCATTGATCCTTCCGAGCGTGGCACTGCCTCCTCTGCACTGATGTCTGAGTATTTTAGCACAAAGCCGCATGCTTGCAGTCCATCATTCCTTCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAATACCGGGATGATGCACAAAGGAAAAAGGCCGGAGTGGCTCGTGAGGCTGCGACGACAGCAAAAAGGCCAAAACGGGTCCAGAAAGTTTTGGATTGCCCCAACAATAATAATAAAACAGCTACAAAAGAGGAAATGCAGAACAATGCTCAAAATGGTGGTAGAGATGATAAAGTATATCAGACAAAGGGAAGAATCGGAGTTGTGCAGCAGAAAGAGATGCAACATAAACCAATGTTTGATGCTAAGTCAGAGGCTGCCAAAACAAATGGTTCTCATGGCTATAGTGTATACTCAGGTCCGGCACCAGCCTCGGGATCTACCGGCTTTACTTGGGCTACTAAGAGGCGAAAAGATGCTGCTTCAACTTTATCAGATGGCTCAAGAAGTAAAATCAGTGGACTTGATCCAAACTTCGCCAAAGGAACATATGATTTAGCAAGACAAGGGATTGATGTTTCACAAAGAAATCGTAGTTACACAAACTTTCAAGATGAAACACATCAAGAATCATTTGATGGAGCTGATGAGTACTTGGATTATGATCCCACAGAAAAAGCAGATTCTATGATAAGTACTCAGGGCAACATTAATGAAGACTTGCATTTTGAGAATGGCATGAGAAGAGGAGCCAGAAAATCACGGTTTGGTTGA 2049 0.4607 MGCVNSKKARAGDPSASPADDGVAYVKSYSRRGRLASGRVGAVVSSSPASRGRSSTSAVVAGEAAEVREGGGDAKGDEAVAAEKLEKKSSKDMVVRENGNGNNGGRGSSRQIGALNARIGLSHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLKSDAFEKLDKIGQGTYSSVFQAREVHSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNVMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSESQIKCYMRQLLSGMEHCHLRGIMHRDIKVSNILVNNDGVLKIGDFGLANTLSPNNKNPLTSRVVTLWYRAPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHRIFKLCGSPPEEFWRKCKLPLATMFKPQTTYESSLWERCKGFPPTAVSLIETLLSIDPSERGTASSALMSEYFSTKPHACSPSFLPKYPPSKEMDAKYRDDAQRKKAGVAREAATTAKRPKRVQKVLDCPNNNNKTATKEEMQNNAQNGGRDDKVYQTKGRIGVVQQKEMQHKPMFDAKSEAAKTNGSHGYSVYSGPAPASGSTGFTWATKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLARQGIDVSQRNRSYTNFQDETHQESFDGADEYLDYDPTEKADSMISTQGNINEDLHFENGMRRGARKSRFG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02854 682 Pfam Protein kinase domain 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g02854 682 MobiDBLite consensus disorder prediction 497 523 - -
Adu04g02854 682 SUPERFAMILY Protein kinase-like (PK-like) 153 446 IPR011009 -
Adu04g02854 682 MobiDBLite consensus disorder prediction 1 22 - -
Adu04g02854 682 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Adu04g02854 682 MobiDBLite consensus disorder prediction 497 521 - -
Adu04g02854 682 MobiDBLite consensus disorder prediction 43 57 - -
Adu04g02854 682 Gene3D Transferase(Phosphotransferase) domain 1 241 482 - -
Adu04g02854 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Adu04g02854 682 PANTHER CYCLIN-DEPENDENT KINASE 105 617 - -
Adu04g02854 682 SMART serkin_6 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g02854 682 ProSiteProfiles Protein kinase domain profile. 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g02854 682 MobiDBLite consensus disorder prediction 34 78 - -
Adu04g02854 682 PANTHER CELL DIVISION PROTEIN KINASE 105 617 - -
Adu04g02854 682 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
Adu04g02854 682 MobiDBLite consensus disorder prediction 659 682 - -
Adu04g02854 682 CDD STKc_CDK9_like 158 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02854 Adu-Chr4 116542817 116546097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02854 156 480 Core Cell Cycle Gene Families AT5G10270 46.921 2.03e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Adu04g02854 Pkinase 7.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02854 - - lja:Lj1g3v2982400.1 838.18