Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02842 ATGGGAAGATCACCATGTTGTGACAAAGTGGGTTTGAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAACTCTTAGCCTATATTGAAGAACATGGTCATGGAAGCTGGCGCGCTTTGCCAGCAAAAGCAGGGCTTGAAAGGTGTGGGAAGAGCTGCAGATTGAGATGGACAAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAGCCATCATTCAGCTTCATGCACTCTTAGGAAACAGGTGGTCAGCTATAGCCACACATTTGCCAAAGAGGACAGACAATGAGATAAAAAATTATTGGAACACACATCTCAAAAAAAGATTAACAAAAATGGGCATCGATCCTGTAACTCACAAGCCCAGAAACGATGCCCTAGTCTCTGGTGACGGCGGCCATTCAAAGAAGGTCGCCGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCCGAAGCAAGGTTGGTTAGGGAATCAAAATTACGTTCATCACAACAACATTCATTGCAAATTCCAAGTTCTACTACCACTTTTCCATCATCGTCTTCGTCTTCGTCCTCAGCTCAAGTTATGATCAAATTAGCAGACGAATCTCCGATAACAACAACCAAAGATTGGGCTAATAATGAAGATTGGTTATTGAGATCTAATCATGAAAGTAATGGTGGTGGTGGAATGGGAAATGCTGAACTTGAGTCACCAACATCTACATTATCATTCTCGGAGAACAATGCATCACCAGCAATAATTGGAGAAAATAGCAACAATAATGTTAATGTAGTGGTGCCTATGATTGAGTTTGTTGGAGCTACTTCAGGTTCATATTCTGAGAATGATGGAATTATTAGGAGTATTAACGTGAAGGAAGAAGGTAGTGAAGATCATGATCATCATCATCAACATGAGTGGAAAGACTATGATAATAATTCTTCAATGGGTACTTTCAACCCTAGCTTGCATGAATTGACAATGATGACCATGGAATCCACGTGGGGAAGTTCTTCTCATCATCATCAAAATCATGATCATGATGATGAATCTCTTAGGACAAGTGGTAGTAATGGTGCACATGTTAATGCTGGTGATGATGATGATGATGAAGAAGATGAAGAGTTAGGGTTCACAAATCTTCTGCTGAATACTAATAATAATAACAACCCTAATAATGATAATAATGAATTGAGTTTGTCATCTGAAGGTGGTGGTGGTAGTGGCGGCGGTGGTGGTGATGGTGGTGGGGAGTCTCATAACAATGACAACGGTGATTCCTATGAAGATAAGAACTATTGGAACAGCATTCTCCATTTGGTGGATTCTTCACCTTCTGATTCACCAATCTTTTGA 1374 0.4105 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQAIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPRNDALVSGDGGHSKKVAANLSHMAQWESARLEAEARLVRESKLRSSQQHSLQIPSSTTTFPSSSSSSSSAQVMIKLADESPITTTKDWANNEDWLLRSNHESNGGGGMGNAELESPTSTLSFSENNASPAIIGENSNNNVNVVVPMIEFVGATSGSYSENDGIIRSINVKEEGSEDHDHHHQHEWKDYDNNSSMGTFNPSLHELTMMTMESTWGSSSHHHQNHDHDDESLRTSGSNGAHVNAGDDDDDEEDEELGFTNLLLNTNNNNNPNNDNNELSLSSEGGGGSGGGGGDGGGESHNNDNGDSYEDKNYWNSILHLVDSSPSDSPIF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02842 457 CDD SANT 69 112 IPR001005 -
Adu04g02842 457 Gene3D - 69 116 - -
Adu04g02842 457 CDD SANT 16 61 IPR001005 -
Adu04g02842 457 PANTHER TRANSCRIPTION FACTOR MYB106 1 450 - -
Adu04g02842 457 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Adu04g02842 457 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu04g02842 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu04g02842 457 MobiDBLite consensus disorder prediction 300 327 - -
Adu04g02842 457 MobiDBLite consensus disorder prediction 340 436 - -
Adu04g02842 457 MobiDBLite consensus disorder prediction 225 250 - -
Adu04g02842 457 MobiDBLite consensus disorder prediction 385 409 - -
Adu04g02842 457 MobiDBLite consensus disorder prediction 171 195 - -
Adu04g02842 457 Gene3D - 13 66 - -
Adu04g02842 457 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu04g02842 457 MobiDBLite consensus disorder prediction 345 360 - -
Adu04g02842 457 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu04g02842 457 MobiDBLite consensus disorder prediction 122 141 - -
Adu04g02842 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu04g02842 457 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu04g02842 457 MobiDBLite consensus disorder prediction 300 316 - -
Adu04g02842 457 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 450 - -
Adu04g02842 457 SMART sant 13 63 IPR001005 -
Adu04g02842 457 SMART sant 66 114 IPR001005 -
Adu04g02842 457 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02842 Adu-Chr4 116458151 116461028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02842 1 260 MYB Transcription Factor Family AT3G01140 64.615 1.40e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu04g02842 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02842 K09422 - gmx:100101835 431.409