Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02816 ATGGACATAGCAGCACAAACAACAATCAACAACAACAACAACATCAACAATAGTAGCACTACTCCAACAAAATCATCACCACCAACTGAAGAACATGAAACTGAAACACCAACTAGGATTATTCAAAACACTACTACTACTACTACAACCATACCCAACACACCAACACCATCAAAGGCTTTAACTTTCTCAAATGGGGTTCTAAAACGCCACCACCCTCACCATATCTCCGCCGCCAACCACCACCACCAACTCGTTGTATACAAGGAATGCTTGAAGAACCACGCCGCCGCTCTCGGCGGCCACGCGCTCGACGGCTGTGGGGAATTCATGCCCGCACCCACCGCCACCGCCGGCGACCCTACATCCATCAAGTGCGCCGCCTGCGGCTGCCACAGGAACTTCCACCGCCGTGAGCCAGAGGACCCGCTTGCGTCTCCGCCGCCGATCTCCTCCGCTTACTATCACCACCCGTCCGCAGCACCTCACATGCTACTTGCCCTCTCCGGCGCTGGCATCGCGGCGCCGCCGGAGAGCACCGCGGCACCAATTTCCGCCGCCGCAGCTTTAGCGTCTCCGAGGAAGAGGTTCAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCAGAGCGTGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTTCATGAGTTCTGCAGCGAGGTTGGCGTTGATCGTGGTGTTCTCAAAGTTTGGATGCATAACAACAAGAACAATCTCGCTAAGAAAGAGAGTAATGGCGCTGCTGTTACCACCATTAACGGTGGTGTTGGTGTTCTTGGTAGTGGTGGTGGTAGCAGAAGCATTATTATGGAGGAAGATCCTAATAACAACAACAATGGTAATGGTGTTGGTGTTGGTGTTAATGGCGGTGCTAATGGTTCTTCTTCTTCTTCTTAA 939 0.5218 MDIAAQTTINNNNNINNSSTTPTKSSPPTEEHETETPTRIIQNTTTTTTTIPNTPTPSKALTFSNGVLKRHHPHHISAANHHHQLVVYKECLKNHAAALGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRREPEDPLASPPPISSAYYHHPSAAPHMLLALSGAGIAAPPESTAAPISAAAALASPRKRFRTKFSQEQKEKMHKFAERVGWKMQKRDDDLVHEFCSEVGVDRGVLKVWMHNNKNNLAKKESNGAAVTTINGGVGVLGSGGGSRSIIMEEDPNNNNNGNGVGVGVNGGANGSSSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02816 312 MobiDBLite consensus disorder prediction 285 312 - -
Adu04g02816 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 145 265 - -
Adu04g02816 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 143 - -
Adu04g02816 312 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 145 265 - -
Adu04g02816 312 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 143 - -
Adu04g02816 312 Pfam ZF-HD protein dimerisation region 86 140 IPR006456 -
Adu04g02816 312 SUPERFAMILY Homeodomain-like 188 255 IPR009057 -
Adu04g02816 312 MobiDBLite consensus disorder prediction 1 57 - -
Adu04g02816 312 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Adu04g02816 312 Gene3D - 183 256 - -
Adu04g02816 312 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 194 251 IPR006455 -
Adu04g02816 312 MobiDBLite consensus disorder prediction 1 27 - -
Adu04g02816 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 88 139 IPR006456 -
Adu04g02816 312 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02816 Adu-Chr4 116113797 116115278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02816 26 274 ZF-HD Transcription Factor Family AT3G28920 48.763 2.83e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Adu04g02816 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02816 - - gmx:100786999 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02816 04 116113797 116115278 Adu04g02816 04 116113797 116115278 ECH
Adu10g02322 10 98406178 98407871 Adu04g02816 04 116113797 116115278 PCT