Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02787 ATGGGTTACCTGAGCAAAACTTCAAGGACTCTAAGGCAATCAAATTACCTCTCTTTATTACGAAATTCAACCTTTTTCCCATTCAACTCATTAAGCAGCACCACCTTTCATCACCAACAGCGTGCACTCTTGTGTTCTCAGTCGCGGCAACAGAACATTAAGGATAAGAGCGCCATAGATTTGAGCCAGTACCCTCCTGAACTCATTCGAAATTTCTCAATCATTGCGCATGTTGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAGGGACATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGAGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACAGGACAAATGGTGATGATCATAGTGACGGAAAGGATTCACCTAGTTTTTTGCTGAATCTTATTGACACTCCCGGTCATGTGGATTTTAGCTATGAGGTGTCAAGGTCACTAGCAGCTTGTCAAGGCGTACTTTTGGTTGTTGATGCCGCGCAAGGAGTCCAAGCGCAAACTGTTGCTAATTTCTACCTTGCTTTTGAGGCCAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCGTTAAAGCCCAATTGAAATCAATGTTTGATCTTGACCCTAGTGATGCATTGCTAACATCTGCTAAAACTGGAAAGGGTCTTGAACAAGTCCTTCCAGCTGTTATAGAGCGCATCCCTCCTCCTCCTATGCTTACACCTACTGGAATCTTGCTTACTGGTCAAGTTGGTTATGTTGTAAGTGGCATGCGTTCAACAAAAGAAGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACTGTAGAGCCTCTCCCAGGATTTAAACCAGCAAAACATATGGTTTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGGCTGACATGTAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACAGCTCTAGGTTTGGGTTTCAGGTGTGGATTTCTGGGTTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGCAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAATATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTACGTTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAACCTACAGTATTAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACCCTTTGCTCGGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGAGAAATTGTTGTCGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTTGATTATGAGGATGCAGATTATCAGCAATCTGATCTGGTGAAACTCGATATCCTCTTAAATGGACAACCTGTTGATGCAATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAGCTAGTAGAGAAATTGAAGAAAGTCATAGACAGCAGGCAAATGTTTGAGATAACGATACAAGCTGCCATTGCTTCAAAGATTATAGCAAGAGAGACGATTTCTGCGATGAGGAAGAATGTTCTTGCAAAGTGTTTCATAGTAGACGTGTTGGAAGATGGTTGCTTATTCAATAGTGGATTTATAATATGCTGGCTTCACAAATTCGATGCTAAGGATAGTGCTAGGGACAGAGATGATAAAGGCAATTTACGTGGAATGGCTCCTTTGTAG 1860 0.4226 MGYLSKTSRTLRQSNYLSLLRNSTFFPFNSLSSTTFHHQQRALLCSQSRQQNIKDKSAIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHRTNGDDHSDGKDSPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFEANLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPAVIERIPPPPMLTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQQEYGAHVISTVPTVPYIFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDSRQMFEITIQAAIASKIIARETISAMRKNVLAKCFIVDVLEDGCLFNSGFIICWLHKFDAKDSARDRDDKGNLRGMAPL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02787 619 SUPERFAMILY EF-G C-terminal domain-like 310 388 IPR035647 -
Adu04g02787 619 Hamap Elongation factor 4 [lepA]. 65 619 IPR006297 GO:0005525
Adu04g02787 619 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 259 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 259 579 - -
Adu04g02787 619 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 56 259 - -
Adu04g02787 619 Gene3D - 67 255 IPR027417 -
Adu04g02787 619 CDD EF4_III 309 385 - -
Adu04g02787 619 Pfam Elongation factor Tu GTP binding domain 69 256 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 Gene3D - 499 574 IPR038363 -
Adu04g02787 619 SUPERFAMILY EF-G C-terminal domain-like 419 513 IPR035647 -
Adu04g02787 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 253 IPR027417 -
Adu04g02787 619 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Adu04g02787 619 Pfam Elongation factor G C-terminus 420 505 IPR000640 -
Adu04g02787 619 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Adu04g02787 619 CDD lepA_C 420 499 IPR035654 -
Adu04g02787 619 CDD LepA 70 258 - -
Adu04g02787 619 Gene3D Translation factors 256 301 - -
Adu04g02787 619 Gene3D Elongation Factor G (Translational Gtpase), domain 3 302 384 - -
Adu04g02787 619 PANTHER TRANSLATION FACTOR GUF1-RELATED 259 579 IPR006297 GO:0005525
Adu04g02787 619 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 259 IPR006297 GO:0005525
Adu04g02787 619 TIGRFAM small_GTP: small GTP-binding protein domain 72 247 IPR005225 GO:0005525
Adu04g02787 619 Gene3D - 385 498 - -
Adu04g02787 619 Pfam GTP-binding protein LepA C-terminus 507 578 IPR013842 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02787 Adu-Chr4 115675987 115680634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02787 69 210 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 2.27e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02787 K21594 - cpap:110820201 848.966