Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02734 ATGGGTGAGAAAGATATTGGTAATGAAGATGTGGGGTTGAGTTTGAGTTTGAGTTTGAGTTTGGGAAGAGGATGTTCTTCATCTCCGCCACCTTTGAAGCCACAAAGATCGGTTCCTATGAATAACATCAACGAGAAGAGTTCATGGAATGAGTTGTTTCAGTTATTACCACAAGATAGGAGCACAGATATGAGGCCGTTATTTGGTGGAGGAATCAACATGAATTCGATGCCGTCAACGGCGGAGACTCCGCCGGATTGCAACCAGGACAACCGTGATTCATCGCCAAACAACAGCAGTTTATCAAGTGGCAGTGGCTGCAAGCGAAGCGAGAGAGAAGAGGACAATGGCGCTGCGGTTGCCGGCATCGAATTGGCGTCGTGCTCGCGGGGAAGTGATGACGAGGATGGCGGCGGCGGAGAGGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCGATGTTATTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAACAGACATTGGCAAAGGAATTGAATCTGAGAGCCAGACAGGTGGAGGTGTGGTTCCAGAATAGGAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGGACATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGCCCTTCTTGCGAGCGTGTCGCCGTCTCATCCGCCTCGTCCTCCGCCTCCACCGCTCACGTGCCGGCACTACAAAGTAATTGCAACAACTCGTTGGGTCCAAACATCCAGCGGCCGGTGCGCGTCAACACTTGGCCATTTGACAGCCCAATTTCGCGGCCGTAG 918 0.5 MGEKDIGNEDVGLSLSLSLSLGRGCSSSPPPLKPQRSVPMNNINEKSSWNELFQLLPQDRSTDMRPLFGGGINMNSMPSTAETPPDCNQDNRDSSPNNSSLSSGSGCKRSEREEDNGAAVAGIELASCSRGSDDEDGGGGEAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSASTAHVPALQSNCNNSLGPNIQRPVRVNTWPFDSPISRP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02734 305 Coils Coil 206 236 - -
Adu04g02734 305 Pfam Homeobox associated leucine zipper 200 233 IPR003106 GO:0006355|GO:0043565
Adu04g02734 305 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Adu04g02734 305 SMART HOX_1 142 204 IPR001356 GO:0003677
Adu04g02734 305 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Adu04g02734 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 297 - -
Adu04g02734 305 Pfam HD-ZIP protein N terminus 8 113 IPR006712 GO:0005634
Adu04g02734 305 PANTHER - 9 297 - -
Adu04g02734 305 Gene3D - 138 205 - -
Adu04g02734 305 MobiDBLite consensus disorder prediction 37 57 - -
Adu04g02734 305 CDD homeodomain 144 201 IPR001356 GO:0003677
Adu04g02734 305 MobiDBLite consensus disorder prediction 19 115 - -
Adu04g02734 305 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Adu04g02734 305 MobiDBLite consensus disorder prediction 73 106 - -
Adu04g02734 305 SUPERFAMILY Homeodomain-like 133 201 IPR009057 -
Adu04g02734 305 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02734 Adu-Chr4 115079536 115082015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02734 6 296 Homeobox Transcription Factor Family AT5G47370 51.656 6.46e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu04g02734 HD-ZIP_N 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02734 K09338 - gmx:100819624 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02734 04 115079536 115082015 Adu04g02734 04 115079536 115082015 ECH
Adu02g00523 02 6685436 6688907 Adu04g02734 04 115079536 115082015 PCT