Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02708 ATGGATTCCGATTATGAATTTCTAGAATCTGTTCAACAATACCTTCTTGGACATGATTCCAACAACACGGTTGACCTTTTTGACCATAATACCCTCCAATTTCCCTCTCACAACCCCTTACCAAACCCTAAATCCGATATACTTCAAGAACAAGAAAGAGATACAAATGAAAATGAACATGCGCCTCCAACATGGAAGCGTTATAGAGGCGTGAGGCGGCGGCCGTGGGGGAAGTTCGCCGCGGAGATAAGGGATCCGAAGAGGAACGGAGCTAGGGTTTGGCTTGGAACTTATGAGAAGGAAGAAGAAGCTGCTTTGGCATATGATAGAGCTGCTTTTAAATTGCGTGGTCAAAAAGCTAAGCTCAATTTTCCTAATCTTTTTGGCTCTGATTCTGAAAATGTATCCTTAGAAGTAATGGAGCCAATCATAAAGATCACAACTTGTAAGGAGAATTTCTCAGACTCTTCTTCATCATCATCATCATCACTTGCAGGGTCAAAGAGAAAGAGGAACTTAACTCATTTACTAAATCAACTAGCCAAAAATAAGAGCCAAGCCAAAGTTTATGTAGGAGGAAATTAA 585 0.4085 MDSDYEFLESVQQYLLGHDSNNTVDLFDHNTLQFPSHNPLPNPKSDILQEQERDTNENEHAPPTWKRYRGVRRRPWGKFAAEIRDPKRNGARVWLGTYEKEEEAALAYDRAAFKLRGQKAKLNFPNLFGSDSENVSLEVMEPIIKITTCKENFSDSSSSSSSSLAGSKRKRNLTHLLNQLAKNKSQAKVYVGGN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02708 194 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Adu04g02708 194 MobiDBLite consensus disorder prediction 30 45 - -
Adu04g02708 194 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 186 - -
Adu04g02708 194 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Adu04g02708 194 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Adu04g02708 194 MobiDBLite consensus disorder prediction 30 63 - -
Adu04g02708 194 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Adu04g02708 194 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Adu04g02708 194 MobiDBLite consensus disorder prediction 47 63 - -
Adu04g02708 194 PANTHER DNA-BINDING DOMAIN 2 186 IPR044808 GO:0003700|GO:0009873
Adu04g02708 194 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Adu04g02708 194 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Adu04g02708 194 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02708 Adu-Chr4 114687813 114688515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02708 67 130 AP2-EREBP Transcription Factor Family AT2G44840 84.375 1.67e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu04g02708 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02708 K09286 - gmx:548037 202.601