Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02700 ATGGGTTCGCCGTTGAAGAAGATCATGCTATGCAGTTCGGAAAAGGAGATTTTCAGTGTGGAAGAACAAGTGATGGTACAACATTCTGTGATCATAAACAACATGATCGAAGATGGGTCGTACAACCATGAAGAGAGCAAGATTCCATTGGATTGCGTTGACTCCAAGACTCTCAAGAAGGTCATCGATTATTGTACACACCACACTCACCACCACAACGACAACCAAGAAGATCTTGAGGCTTGGGATGCTCAATTTCTCAATGTTGATTCTAACGGCCTTTATGATTTGTTGATGGCAGCAAATTATCTTGAGATTAGAAATCTCATGGATCTGATATACAGAACTATAAAAAATATGATAAAGGGAAAGAAAATAGATGAGATACGCAGAATCTTGAACATTAAAGATCATGGCTTCACTCCTGAGGAGGAAGAACAAAATCGCAAGGAGTACCCACATTTTTATTAG 471 0.3928 MGSPLKKIMLCSSEKEIFSVEEQVMVQHSVIINNMIEDGSYNHEESKIPLDCVDSKTLKKVIDYCTHHTHHHNDNQEDLEAWDAQFLNVDSNGLYDLLMAANYLEIRNLMDLIYRTIKNMIKGKKIDEIRRILNIKDHGFTPEEEEQNRKEYPHFY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02700 156 Pfam Skp1 family, dimerisation domain 108 153 IPR016072 GO:0006511
Adu04g02700 156 Gene3D Potassium Channel Kv1.1; Chain A 4 156 IPR011333 -
Adu04g02700 156 SUPERFAMILY Skp1 dimerisation domain-like 79 154 IPR036296 GO:0006511
Adu04g02700 156 PANTHER SKP1-LIKE PROTEIN 13 4 152 - -
Adu04g02700 156 SUPERFAMILY POZ domain 7 71 IPR011333 -
Adu04g02700 156 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Adu04g02700 156 Pfam Skp1 family, tetramerisation domain 6 69 IPR016073 GO:0006511
Adu04g02700 156 PANTHER SKP1 4 152 IPR016897 GO:0006511
Adu04g02700 156 SMART skp1_3 5 106 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02700 Adu-Chr4 114597653 114598123 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Adu04g02700 Skp1_POZ 1.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02700 K03094 - tcc:18607537 132.109