Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02590 ATGGAATTCGATGCTGCAATTCCCATGTCCCGTGAAGGCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACGATGGAACCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACAGGACTCTGTAGATTCGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAACTGGCTATTGCCGCTGCACGGATGAAAGGAGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGAACTTGCAAATTCGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAGGCGGAATGTGCTTACTATTTAAGAACCGGACAGTGCAAATTTGGGAACACTTGCAAATTCCATCATCCTCAACCAAGTAATATGGTGCTTTCAATGCGCAGTTCTCCTGTTTACCCCACCGTTCATTCTCCAACAACGCCAGGTCGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGATCAGACAGTACACAACAATCAGTTGGAAATGAGGGAGAACATATTTCCTGAAAGACCTGGCCAGCCTGAATGCCAGTTCTACATGAAGACCGGAGATTGTAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCGCGTGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCAATTGGCCTTCCTTTACGTCCGGGAGAGCCATTGTGTGTCTTTTACTCGCGATATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTTGACCACCCCATGGGAATCTTTGCCTATAATATGTCTACATCACCCTCAGCTGATGCTTCAGGACGACGAATGTTGGGTTCTTCATCAGGAACCGCCGCATTAAATTTATCACCAGAAGGACTTGTTGAGTCAGGCTCTGCGAAGCCAAGGAGGCTTTCATTGTCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 1068 0.47 MEFDAAIPMSREGIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEAECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVHSPTTPGREWFRYLAGVHTMVKWDQTVHNNQLEMRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNMSTSPSADASGRRMLGSSSGTAALNLSPEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02590 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 184 - -
Adu04g02590 355 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Adu04g02590 355 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Adu04g02590 355 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Adu04g02590 355 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Adu04g02590 355 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Adu04g02590 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 206 354 - -
Adu04g02590 355 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Adu04g02590 355 SUPERFAMILY CCCH zinc finger 264 288 IPR036855 GO:0046872
Adu04g02590 355 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Adu04g02590 355 MobiDBLite consensus disorder prediction 302 355 - -
Adu04g02590 355 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Adu04g02590 355 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Adu04g02590 355 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Adu04g02590 355 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Adu04g02590 355 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
Adu04g02590 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Adu04g02590 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Adu04g02590 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Adu04g02590 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Adu04g02590 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 288 IPR000571 GO:0046872
Adu04g02590 355 Gene3D - 118 164 - -
Adu04g02590 355 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Adu04g02590 355 MobiDBLite consensus disorder prediction 302 319 - -
Adu04g02590 355 SUPERFAMILY CCCH zinc finger 219 245 IPR036855 GO:0046872
Adu04g02590 355 Gene3D - 213 297 - -
Adu04g02590 355 Gene3D - 37 117 - -
Adu04g02590 355 PANTHER PROTEIN PHOSPHATASE RELATED 206 354 - -
Adu04g02590 355 PANTHER PROTEIN PHOSPHATASE RELATED 11 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02590 Adu-Chr4 112217344 112221963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02590 19 353 C2H2 Transcription Factor Family AT3G02830 54.545 4.98e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu04g02590 zf-CCCH 4.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02590 - - adu:107485976 676.011