Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02578 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCGCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTGTTGCTAAGAACATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAGCGCCATCCATACTCTATAATAGAGTGTGAGCCAAAGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAGATTTTGAGGCGAAGGCCATTCCTCATTAAGAACCTCGAAAATGTTATGCAAAAGTTCCTCCAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAAAAGCTGGCAATCTTCACAGCACTTGCATTCTCCCAGAAGCTCTCTGGTCTTCCACCAGAGACCGTGTTCCAACCACTTCTTAAGGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTCATAACCGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAAAGAGGAAAAGTAGAGGATAAGCTCTTGGAGTTTTTCCCTCCTACAAAAAGATCCAACGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGACTAGTGGCATTGGTCGAGTACAATGAGAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTGACAACTCAGATAACGGAGGAGGTTGATATATCTGAAGTAATTGAGAATGTGAAGGTGCGGGTCCGAGATGCTAAATTGCCAGATATTGAGGTTGTCCGGGTCTTGTGGGATGTTTTGATGGATGCTGTCCAGTGGTCAGGGAAAAATCAGCAACAGAATGCAAATTCAGCCCTACGCCAGGTAAAAACCTGGGCAGAACTGTTGAACACATTCTGCACCACTGGGAAACTGGAGCTAGAACTGATGTACAAGGTACAAATGCAATGCTACGAAGATGCAAAACTGATGAAGCTGTTCCCAGAGATTATTAGATCGCTCTACGAGCAGGATGTGCTGGCTGAAGACACCATCCTTCATTGGTTCCGCAAAGGAACAAACACGAAGGGCAGGCAAACCTTTGTGAAAGCATTGGAATCCTTTGTGAATTGGCTGGAGGAGGCAGAAGAGGAGGAATAA 1236 0.4498 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELVAKNIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMQKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLIDNSLDDLISILKRGKVEDKLLEFFPPTKRSNESFSEHFSKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEVDISEVIENVKVRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYEQDVLAEDTILHWFRKGTNTKGRQTFVKALESFVNWLEEAEEEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02578 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Adu04g02578 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Adu04g02578 411 CDD W2_eIF5C_like 216 405 IPR043510 -
Adu04g02578 411 SUPERFAMILY ARM repeat 252 408 IPR016024 -
Adu04g02578 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Adu04g02578 411 SMART 542_3 325 410 IPR003307 GO:0005515
Adu04g02578 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Adu04g02578 411 Gene3D - 243 411 - -
Adu04g02578 411 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02578 Adu-Chr4 112058635 112062468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02578 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 3.85e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02578 - - gmx:100782537 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02578 04 112058635 112062468 Adu04g02578 04 112058635 112062468 ECH