Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02542 ATGGCTTCAATGAACTTGCTGGGTTTCTCTCTCTCCCCTCAAGAACACACTACTACTACTCATCATCATCATCAAACTCGTTTTGGGCTATTCAATCCCACTGCACAAGATGATGTAACTGCTGCTGATGATGGAAACTGCTTCGATCTCACTCCTTCCACTCATGCCGCTACTACTCTCAACCTCCCTCCTTTTCCCATCTATCAAGAACCCTTCAACAATCATCATCATCTTTCTACTCATCAAGATTGGAAGGAGAATAACTACATCAACCAAAACCTGCTATTAGAAACTTCATGCAACAACAATAACAATGTCGACAACAACCACCACCACCATCACCAACAACCCAAGCTCGAGAACTTCCTCGGTGGACACTCCTTCGCCGATCATCATCACGATTACGGTGCCAACTCATCAGGAGACTACCTCTTCCAAAACTGCTCTCACCCGGAAGTTACAGCAGGAGGAGGAGAAGGCTCCGCCGGCGGCGGCGGTGGAAGCACAAACTCAATAGGGTTGTCAATGATAAAAACATGGCTAAGGAACCAACCACTTCATCATCATCACTCATCAGAAAACAAAGAAACCATGATTGCATCTTCAAATAATACTACTGCACCAACAACTCAAACCTTGTCGCTTTCTATGAGTACTGGCTCACAATCTCTCCCGCTATTACCACCTACTAATAATAATAATGTTAGTGTTGCCGGTGCCGGTGCCGGAGGAGGCGGCGGAGACAGTTATTCTTCGTCGGAAATAAACAGCAACAACAACAACAAACAGATAGTAGTAGTAGCAGGAGGGTCTTCATCAACGGGAGCAGTTGAAAATGGAAGCATTGTTGAGAATAACAATGTGACCAAAAAATCCATTGACACTTTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATTTGTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGGAGGCAAGGAGGTTATGATAAAGAGGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCCCTAAAATACTGGGGAACCACAACAACAACAAATTTTCCGATTAGTCAATATGAAAAAGAATTAGAAGAAATGAAGCACATGACAAGACAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGATTTTCTCGTGGTGCATCCATTTATCGTGGAGTAACAAGGCATCATCAGCATGGTAGATGGCAAGCTCGGATTGGAAGAGTTGCAGGCAACAAAGATCTTTATCTAGGAACTTTTAGCACTCAGGAAGAGGCAGCAGAAGCATATGACATAGCAGCCATAAAGTTCCGAGGTTTGAATGCAGTTACAAACTTTGACATGAACAGATACGATGTGAAGAGCATACTAGAGAGCAGCACCTTGCCCATTGGTGGCGCCGCCAAGAGGTTGAAGGACATGGACAATGGAGACCTAATTAATGTAGACAATAGTGTTCACCAAAGACAACACCAAGAAGATCACAGCAACAACATCAATTCTCATTCTCTAACTGATGGAATCAACAACTTTGTAACTGCGGCGGCTGCCACCCATCATGGTGGTTGGCCTGCTTCCCTTGCATTCCAACACTACCCTGCTAACTATGGATCTTCATCATCATCATCACAAAGGTTCTGGTGCAAGCAAGAGCAAGATTCTTCTGATCAAAACAATGTGTCTCACAATTTTCATCAAGAAATTCATCCTTTGCAACTAGGGGGTAGTACCCACAATTTCTTTCAGCATGGTATCATGACATTGGATCATTCTGCTTCCATGGATAACAATAACAGCTCTGGATCAAGTTCTGTGGTTTATGGTGGGGGTGGTGGGGGTGGTGGTGGTGGTGATGTCAACGGTTATGTGTTTCAAATGGGTGCTGTTATTGGCAATGATAACAATGAAATCAAGGGACTTGGCTATGAAAGTGTTTTTGGCAGTGAGGCATATAATCAGACACATGGAAGGCATCTGTATTATCAGCAACAATCATCAACAATGGATCATAACAATAATGGAGCTGTAGTAGTTAAGGGTAGCCCATATGATCATCATCATCATCATGGTGGTGGTTCCAACAATTGGGTTCCAACTGCAATACCCACTCTTGCAGCATCAAGGGGTCTCTGCCATGGGGCTCCACCATTCACATTATTGCATGAATGA 2205 0.4381 MASMNLLGFSLSPQEHTTTTHHHHQTRFGLFNPTAQDDVTAADDGNCFDLTPSTHAATTLNLPPFPIYQEPFNNHHHLSTHQDWKENNYINQNLLLETSCNNNNNVDNNHHHHHQQPKLENFLGGHSFADHHHDYGANSSGDYLFQNCSHPEVTAGGGEGSAGGGGGSTNSIGLSMIKTWLRNQPLHHHHSSENKETMIASSNNTTAPTTQTLSLSMSTGSQSLPLLPPTNNNNVSVAGAGAGGGGGDSYSSSEINSNNNNKQIVVVAGGSSSTGAVENGSIVENNNVTKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESSTLPIGGAAKRLKDMDNGDLINVDNSVHQRQHQEDHSNNINSHSLTDGINNFVTAAAATHHGGWPASLAFQHYPANYGSSSSSSQRFWCKQEQDSSDQNNVSHNFHQEIHPLQLGGSTHNFFQHGIMTLDHSASMDNNNSSGSSSVVYGGGGGGGGGGDVNGYVFQMGAVIGNDNNEIKGLGYESVFGSEAYNQTHGRHLYYQQQSSTMDHNNNGAVVVKGSPYDHHHHHGGGSNNWVPTAIPTLAASRGLCHGAPPFTLLHE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02542 734 SUPERFAMILY DNA-binding domain 301 367 IPR016177 GO:0003677
Adu04g02542 734 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 654 - -
Adu04g02542 734 PANTHER BNAC02G44180D PROTEIN 5 654 - -
Adu04g02542 734 CDD AP2 400 459 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 CDD AP2 301 367 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 ProSiteProfiles AP2/ERF domain profile. 401 459 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 Gene3D AP2/ERF domain 302 367 IPR036955 GO:0003700|GO:0006355
Adu04g02542 734 Gene3D AP2/ERF domain 401 461 IPR036955 GO:0003700|GO:0006355
Adu04g02542 734 ProSiteProfiles AP2/ERF domain profile. 302 365 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 PRINTS Ethylene responsive element binding protein signature 441 461 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 PRINTS Ethylene responsive element binding protein signature 303 314 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 SUPERFAMILY DNA-binding domain 400 460 IPR016177 GO:0003677
Adu04g02542 734 SMART rav1_2 401 465 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 SMART rav1_2 302 371 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 Pfam AP2 domain 302 357 IPR001471 GO:0003700|GO:0006355
Adu04g02542 734 Pfam AP2 domain 401 451 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02542 Adu-Chr4 111648587 111652828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02542 276 565 AP2-EREBP Transcription Factor Family AT5G17430 69.333 7.68e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Adu04g02542 AP2 4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02542 K09285 - gmx:100797584 686.411