Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02513 ATGTCCATGTCTTCAACCTCATCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGCTTTCCTCGTTCTCCTCTCCACCCTCATCTTATCTTCTTACCTCTGCTGTAACCGCAACCGTCGCAATAATATTAACAACCCCACCACCACCCACCGTGACGGCGTCGTTCTCCCACGAATAATCTTCGTCGCAGAAGGCGATGATGACGAAGACGGAGACGAAGAGCGCGGCGCGGTGGGGTTGGAACAGAACGTGATAAACTCGTATCCGAGGTTTCAATTCAGCAGGGACAGCAGTAACATCGGACAGAACACCACGTGTTCCATATGTCTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGCAGGCACTATTTCCACGTCTGCTGCCTTGACTCCTGGCTTAGGCTTAATGGCTCCTGCCCCGTTTGCCGGAACTCGCCGCTTCCGACGCCGGTTCCCACGCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 558 0.552 MSMSSTSSFLNHLGLGYSIAIALAFLVLLSTLILSSYLCCNRNRRNNINNPTTTHRDGVVLPRIIFVAEGDDDEDGDEERGAVGLEQNVINSYPRFQFSRDSSNIGQNTTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPVPTPLSTPLQEVVPLSQYAADRRRR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02513 185 CDD RING-H2_PA-TM-RING 110 153 - -
Adu04g02513 185 Pfam Ring finger domain 110 153 IPR001841 -
Adu04g02513 185 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Adu04g02513 185 SUPERFAMILY RING/U-box 101 159 - -
Adu04g02513 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 157 IPR013083 -
Adu04g02513 185 PANTHER RING-H2 FINGER PROTEIN ATL67 3 185 - -
Adu04g02513 185 PANTHER RING-H2 FINGER PROTEIN ATL67 3 185 IPR044289 GO:0016567|GO:0016740
Adu04g02513 185 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02513 Adu-Chr4 111358555 111359112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02513 3 176 C3H Transcription Factor Family AT5G07040 40.341 1.94e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02513 - - lja:Lj1g3v2807930.1 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02513 04 111358555 111359112 Adu04g02513 04 111358555 111359112 ECH
Adu04g02513 04 111358555 111359112 Adu02g00254 02 2836243 2836890 PCT