Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02488 ATGGCAAATGCACACGCATTAGAGGAAGAGGAAGAAGAAGGAGAGGGACACGAAGCGGTGGAGGAAATCCAACGCGTCATTGAATCGGTTGCGCAATTCGGACAGTATAGAAAGACACAGAGAAAAGAATGTCACAACTTGGTGCGGCGGTTCAAACTCATGCTGCCTATCGTGGAAGAGCTCCGAGATATTCCGGAGCCCTTCCACGAAAACGGCATCGTTTGGTTGAAGAAACTTAGGGATGCACTCTTGTTTGCCAAGGAACTCTTGAGGTTATGTAGCCAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAAGGTGTTTATGAGAAATTGAGTCAAGCATTTGAAGATGTGCCTTGTGAGGAATTAGGAATCTCAGATGAAGTCAGAGAACAGATTGAGCTAATGCACACTCAGCTCAAGCGGGCGAGGAGGAGGACGGATACACAGGACATGGAGCTTGCAATGGATATGATGGTGGTGTTATCCGGCGATGAGCAACGGAGCGCCGACAGTGCCATCATTGAGAGGCTAGCAAAGAAATTAGAGCTTCAAAGGGTTGAGGATCTTAAGATAGAAACCTTGGCGATCAAGCAACTGGCTGATGAAAGAAAAGGGCAACAAGTAGATAGCACCAAGAAAATAATTGGCCTCCTTAACAAGTTGAAGAGAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTCCTGCCTAGGGTGCTTGTGAAGAGCATATCTTTGGTTATTCCTCATGAGTTTCTTTGTCCTATAACCCTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGAATCCAAACATAATACCTGTCCAAAGACAAGGCAAACCCTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAGCATAATTGAAGAATGCCCCGAGAATCGGATCTTGATTGCTGAGCATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCATTGTTGAATCTTTCAATTGATGAGAAGAACAAGAGGCTAATATCAAAAGAAGGTGCTATTCCAGCAATCATAGAGGTTTTGGAGAATGGTAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTCTCAATGCTTGATGAGAACAAAGAACTTGTGGGATTGTCAAATGGGATTCCACCATTGGTGAAACTTTTGAGGAATGGAACAGTTAGAGGGAAAAAAGATGCTATTACAGCACTTTTTAATTTGTCCCTTAACCATGCAAATAAAAGCAGGGCGATTAGTGCTGGTATTGTCGCACCTTTGCTTCAGTTGCTTAAGGACACAAAAACAAACATGATTGACGAGGCTCTATCCATTCTGTTACTGCTCTCCTCGATTTCCGAGGGGAGACAGGAGATTGGACAGCTGTCATTTATCGAGACACTTGTTGAGTTCATTAAGGATGGGACCCCCAAGAACAAGGAGTGTGCTGCTTCTGTGCTCCTGGAGTTGTGTACAAATAACTACTCTTATATACTTGCAGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGGGAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATTTAG 1728 0.4259 MANAHALEEEEEEGEGHEAVEEIQRVIESVAQFGQYRKTQRKECHNLVRRFKLMLPIVEELRDIPEPFHENGIVWLKKLRDALLFAKELLRLCSQGSKILLAMETEAYMIKFQGVYEKLSQAFEDVPCEELGISDEVREQIELMHTQLKRARRRTDTQDMELAMDMMVVLSGDEQRSADSAIIERLAKKLELQRVEDLKIETLAIKQLADERKGQQVDSTKKIIGLLNKLKRIAGMEETSVLDDPVLPRVLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFESKHNTCPKTRQTLDHLQLAPNCALKSIIEECPENRILIAEHGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLISKEGAIPAIIEVLENGSIVAKENSAACLFSLSMLDENKELVGLSNGIPPLVKLLRNGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLQLLKDTKTNMIDEALSILLLLSSISEGRQEIGQLSFIETLVEFIKDGTPKNKECAASVLLELCTNNYSYILAALQYGVYEHLIQIKGSGTNRAQRKANALLDLISRSEQI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02488 575 SUPERFAMILY ARM repeat 317 571 IPR016024 -
Adu04g02488 575 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 14 324 - -
Adu04g02488 575 Gene3D - 16 129 IPR036537 GO:0007166
Adu04g02488 575 Coils Coil 134 154 - -
Adu04g02488 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 316 IPR013083 -
Adu04g02488 575 SUPERFAMILY RING/U-box 258 324 - -
Adu04g02488 575 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 324 573 - -
Adu04g02488 575 PANTHER U BOX DOMAIN-CONTAINING 14 324 - -
Adu04g02488 575 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Adu04g02488 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Adu04g02488 575 CDD RING-Ubox_PUB 263 305 IPR045210 -
Adu04g02488 575 Pfam U-box domain 259 324 IPR003613 GO:0004842|GO:0016567
Adu04g02488 575 Gene3D - 317 574 IPR011989 -
Adu04g02488 575 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Adu04g02488 575 Pfam Armadillo/beta-catenin-like repeat 326 364 IPR000225 GO:0005515
Adu04g02488 575 SMART arm_5 448 488 IPR000225 GO:0005515
Adu04g02488 575 SMART arm_5 366 406 IPR000225 GO:0005515
Adu04g02488 575 SMART arm_5 407 447 IPR000225 GO:0005515
Adu04g02488 575 SMART arm_5 489 529 IPR000225 GO:0005515
Adu04g02488 575 SMART arm_5 325 365 IPR000225 GO:0005515
Adu04g02488 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Adu04g02488 575 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Adu04g02488 575 PANTHER U BOX DOMAIN-CONTAINING 324 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02488 Adu-Chr4 110717805 110720691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02488 20 575 U-box Gene Family AT5G42340 58.033 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02488 - - adu:107485837 1058.13