Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02461 ATGCAATCTGCCGGCAGCGGTGGCTCGGGCCGGAACCCCTCGGCTGGCCGGGCGGCTTCGGCATCGCCGTCGTCGTCTTCCCAATTTAGCCTGGACTCATTGCATCAGCAGCAGCAGAAGATAGGTTCTAGGCAGTCATTTCCACATCAATTGCTAAAAAAACCAGAAGGAAGTGAAGCATTTTTTGCATATCAAACAGGGCTTCAAGGTGGATTTGGGACTAACAATTTCTCACCTTCTAATGCCATGCCTCAGCAGCCTCAAAAATTTGTTGATTTAGGTCAGCAGAGCTCCAGCCAGGGACAAGTTGCTGACCGGCAAATGCTCAATTACCAACAAGCATACCTTCAATATGCTCTGCAGGCTCAACAAAAATCTGCTTTGGCAATGCAGTCACAGAAACAATCTAAAATGGGGATCCCAGGCCCTTCATCTGTGAATGATCGGGACATGCATACTGGAAATCTGAAAATACAGGACCTTATGTCTATGCAAGCTGTTAATCAATCCCAAGCATCATCCTCTAGGAATTCATCTGAACATTTTGCTCATGGGGAAAAGCAGATGGAGCAAGGACAGCAGCTAGCATTTGATCAGAAGAGTGAAGGAAAGCCTTCATCCCAAGGACCAGCCACTGGACACTTAATGCCAGGAAATAGTATGAGGCCACCTGTGCAAGCACCACCAACGCAGCAGAGCATGCTAAATATGTTGAAGGATCCATTACCATTTACTAAGACTGCTCAATATCAGGCTATGCAGGCATGGGCAAGAAATTTATCTGATCCTTCAAGATGTCTTAAGATGGCTCAGCTCATTCCGCAGATGCAATCAAGAACAGTTCCACAACCAAAGGCAAATGATACTAATGTTGGTACTCAGTCATTACCAGTCAGTGTTTCAAACCCACAGGCTAGTTCTCCAACAGTTGCAAGTGAGAACACAACACATACTAATTCATCTAATGATGTTTCTGCACAATCAAGTTCTGCTAAAGCAAAGCAGACAGGTCCATCTAACCATTTTGGCCCACCAATTAATGCCAGTATTGCTGGAAATTCCAGTGAAGTTGCATTGCCACAATTCAATCTTCATGGCAGAGACTCGCAAGGTTCTTTGAGGCAACCAGCAGTAAAAAATGGAATGTCTTCTATGCATCCGCAGCATGCTTGTGCAAGCTTAAACCTAGGTGCAGATCATCCTTTGAATGCAAAAACTTCATCATCTAGTTCAGAACCTGTGCAGATGCAGCACATCAGGCAATCAAATCAATCTGTTGTTCAGGATGGAGGTCTGTCAAACGAAGGGGGTTCTATAAATCATTCAAAATATCAAGGGGCACCATCTCAGATGCCTCAACAAAGAACTGCATTTACGAAACAACAGCTTCATGTTCTTAAAGCTCAGATACTTGCATTTAGACGACTGAAGAAAGGAGAAGGAACTCTTCCCCAAGAACTTCTTCGGGCCATCAGTCCACCACCTCTTGATTCACAAGTGCAGCAACCGGTTACTTCTGCAGGAGGGCAAAATCAAGACCAATCAGAAGTAACTGTGGCAGAACAGCCAAAGCAGATGGAGTCCATTGCCAAGGACTCACAATCTATCTCATCTATTAATGCAAAGGGTTCTTCAAAGCAGGAAGTCTTTGCTAGAGATGAGAAATCCACAACAACAATACATGTGCAAGCTATGCCTTTGGTGATAAAAGAACCTGCTGGAAAGGAAGAGCAACAATCTGTTGGTTGCTCTGCTATGTCGGACCAGGAAGGTGAACATGGAATTAGACAAATACCTGTTAGAAATGAGTCGGTGTTAGATAGGGGAAAGGCTATTGCAGCCCAAGCTTCTGTTTCTGAACAATTGCAAAATAATAAAACTGAACAAGCAAGCATTGTTGCGCAGCCAAAGGATGTGGGCCTCACCAGAAAATATCATGGACCACTATTTGATTTTCCTTTCTTCACCAGGAAACACGATTCCTTTGGTTCATCAATGATGCTAAACCACAATAATTTGTCACTGGCATATGATGTGAAAGAGCTTCTTTATGATGAAGGTGTGCAAGTCCTTAACAAGAAAAGGACAGAAAATTTAAAGAAGATTGAGGGTTTACTGGCAGTTAACTTAGATAGGAAAAGAATTAGGCCAGATCTTGTGTTGAAGTTGCAAATTGAAGAAAAAAAGCTTCGCCTTTTAGATCTACAGGCACGTTTAAGGGATGAGATTGATCAACATCAAAAAGAGATAATGGCAATGCCAGATAGGCCATATAGGAAATTTGTTAAGTTGTGCGAACGTCAGCGTATGGAACTTGCTAGACAAGTGCAGGCATCACAGAAAGCTTTAAGGGAGAAGCAACTGAAATCTATATTCAATTGGCGCAAGAAGCTTCTTGAAGCACACTGGGGCATTCGTGACGCACGGACTGCTCGCAACCGGGGGGTGGCCAAGTATCACGAGAAGATGTTGAGAGAATTCTCGAAACGTAAGGATGATGACAGGAGCAAAAGGATGGAAGCCTTAAAAAACAATGATGTTGATAGGTACAGGGAGATGTTGCTGGAGCAGCAGATTAGTATCCCGGGTGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTAACCCAGACTGAAGAATATCTACATAAATTAGGAAGTAAGATAACAGCTGCTAAGAGCCAACAGGAAGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTGTGAAGAAGAAGTCAGAGTCGCAGCAACTTGTGCTGGAGAGGAAGTGATGATTAGAAATCAGTTTATAGAGATGAATACTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAGCCTTGCTCATGCTGTGAGTGAAAGGGTTGTAAGACAACCATCCATGTTACGAGCTGGAACATTGAGAGACTATCAAATGGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATATTGGCAGATGAGATGGGTCTTGGTAAAACCGTTCAGGTCATGGCATTAATTGCGTACTTGATGGAATTTAAAGGGAACTATGGCCCACATCTTATAATAGTGCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGCATACTTGGTTACCATCCGTGTCATGCATTTTTTATGTTGGAACAAAGGATACAAGATCAAAATTATTTTCTCAGGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAGTTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTCTAGCACGCGATCTTGACAGATACCGTTGTCAACGACGCTTGCTTCTGACAGGAACACCTTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTCCATGATTGGTTTTCAAAACCATTTCAAAAGGAAGGTCCAAATCAGAATGCAGAGGATGACTGGCTTGAAACAGAAAAGAAAGTCATCATTATCCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGCGTTGAAGATGTTGAAGGCTCTCTACCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTTAAATCCACTGGCACCCTTCGTGTTGATCCTGAGGATGAGAGAAGAAAGGTTTTGAAGAATCCACTCTACCAGGCAAAGCCTTATAAAACTTTAAATAACAGATGCATGGAGCTACGCAAAACCTGCAATCATCCAATGCTTAATTACCCATTTTTTGATGAATTTATGGATAGAGACTTTATTGTACAATCTTGTGGGAAGTTGTGGATTTTGGATAGGATCCTTATCAAACTTCAAAGGACTGGACATCGAGTTCTGCTGTTTAGTACCATGACAAAGCTCCTAGACATCTTGGAAGACTATCTGCAATGGCGGAGACTAGTTTACAGGAGAATTGATGGGACAACAAGTTTGGAAGACCGAGAATCAGCAATAATGGACTTCAATAGGCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTAGAGCTGCTGGGAGAGGCCTTAATCTTCAGTCTGCTGACACAGTTGTCATTTACGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGGATTGGACAAAAAAGGGAAGTCAAGGTTATCTACATGGAGGCTGTTGTTGACAAGATCTCTAGCCATCAGAAAGAGAACGAATTGAGAAGTGGAGGCCTTGTTGATATGGAGGATGAACTTGCTGGTAAGGATCGATATATGGGATCTATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGACATGGCTGACGAGGTCATTAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAAAGACGTTCAACTTTGGAGACTTTATTACATGACGAGGAAAGATATCAAGAAACTGTTCATAATGTTCCGTCACTACAGGAGGTTAATCGCATGATTGCTAGAAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGACGAAGAACTGGATTGGAGTGAAGAGATGACACGGCATGATGAGGTGCCTAAATGGCTTCGAACCAGCACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATCAAAGAACATTTTATTTGGTGGCAGTATGGGCGTGGAATCTAGTGAATTGGGTTCTGAAAAGAGAAGAGGACGACCCAAGGGAAAAAAGCTTCCTAATTATAAAGAGTTGGAGGATGATGATATAATTGAGTGCTCTGAAGAAAGCTCTGAGGAAAGAAATGGATATTCTGCACATGAAGAAGGGGAGATAGGAAAATTTGAAGATGAAGTACATAGTGGGGGTGATGGAGCTAATCTCATGGAAAAAGATCAAGTCGAACATGGTCCACCTTTTAATGCTGGATATGAACTTCCTCGGTCTTTAGAAAATGCTAAAAATCACACAGTTGAAGAAGCTGGTACGAGAGGATCATCATTAGATAGTCAAATATTGACACATACAGTGACACCATCAGTTTACTCACGGAAATTTGGTTCCCTCTCTGCATTAGATGCCAAGCCAAGTTCCATTTCAAAAAGGGTACATGGCTTTTTATTTTCTGGGTTTTGTACTCTCTTATTTTCAAATTAA 5256 0.4203 MQSAGSGGSGRNPSAGRAASASPSSSSQFSLDSLHQQQQKIGSRQSFPHQLLKKPEGSEAFFAYQTGLQGGFGTNNFSPSNAMPQQPQKFVDLGQQSSSQGQVADRQMLNYQQAYLQYALQAQQKSALAMQSQKQSKMGIPGPSSVNDRDMHTGNLKIQDLMSMQAVNQSQASSSRNSSEHFAHGEKQMEQGQQLAFDQKSEGKPSSQGPATGHLMPGNSMRPPVQAPPTQQSMLNMLKDPLPFTKTAQYQAMQAWARNLSDPSRCLKMAQLIPQMQSRTVPQPKANDTNVGTQSLPVSVSNPQASSPTVASENTTHTNSSNDVSAQSSSAKAKQTGPSNHFGPPINASIAGNSSEVALPQFNLHGRDSQGSLRQPAVKNGMSSMHPQHACASLNLGADHPLNAKTSSSSSEPVQMQHIRQSNQSVVQDGGLSNEGGSINHSKYQGAPSQMPQQRTAFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAISPPPLDSQVQQPVTSAGGQNQDQSEVTVAEQPKQMESIAKDSQSISSINAKGSSKQEVFARDEKSTTTIHVQAMPLVIKEPAGKEEQQSVGCSAMSDQEGEHGIRQIPVRNESVLDRGKAIAAQASVSEQLQNNKTEQASIVAQPKDVGLTRKYHGPLFDFPFFTRKHDSFGSSMMLNHNNLSLAYDVKELLYDEGVQVLNKKRTENLKKIEGLLAVNLDRKRIRPDLVLKLQIEEKKLRLLDLQARLRDEIDQHQKEIMAMPDRPYRKFVKLCERQRMELARQVQASQKALREKQLKSIFNWRKKLLEAHWGIRDARTARNRGVAKYHEKMLREFSKRKDDDRSKRMEALKNNDVDRYREMLLEQQISIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKSQQEVEEAAKAAAAAARLQGLCEEEVRVAATCAGEEVMIRNQFIEMNTPRDSSSVNKYYSLAHAVSERVVRQPSMLRAGTLRDYQMVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDTRSKLFSQEVMAMKFNVLVTTYEFIMYDRSKLSKVDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRVDPEDERRKVLKNPLYQAKPYKTLNNRCMELRKTCNHPMLNYPFFDEFMDRDFIVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLQWRRLVYRRIDGTTSLEDRESAIMDFNRPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKENELRSGGLVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRSTLETLLHDEERYQETVHNVPSLQEVNRMIARSEEEVELFDQMDEELDWSEEMTRHDEVPKWLRTSTREVNAAIAALSKRPSKNILFGGSMGVESSELGSEKRRGRPKGKKLPNYKELEDDDIIECSEESSEERNGYSAHEEGEIGKFEDEVHSGGDGANLMEKDQVEHGPPFNAGYELPRSLENAKNHTVEEAGTRGSSLDSQILTHTVTPSVYSRKFGSLSALDAKPSSISKRVHGFLFSGFCTLLFSN 1751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02461 1751 CDD SF2_C_SNF 1302 1427 - -
Adu04g02461 1751 SMART ultradead3 971 1160 IPR014001 -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 192 214 - -
Adu04g02461 1751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1547 IPR027417 -
Adu04g02461 1751 Coils Coil 1523 1543 - -
Adu04g02461 1751 Coils Coil 725 749 - -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 166 231 - -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 1 46 - -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 495 545 - -
Adu04g02461 1751 PANTHER SNF2/RAD54 HELICASE FAMILY 30 1734 - -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 277 351 - -
Adu04g02461 1751 Pfam Helicase conserved C-terminal domain 1306 1417 IPR001650 -
Adu04g02461 1751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 987 1152 IPR014001 -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 491 554 - -
Adu04g02461 1751 Pfam SNF2-related domain 978 1283 IPR000330 GO:0005524|GO:0140658
Adu04g02461 1751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1307 1484 IPR001650 -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 132 151 - -
Adu04g02461 1751 Gene3D - 966 1214 IPR038718 -
Adu04g02461 1751 Gene3D - 1215 1426 IPR027417 -
Adu04g02461 1751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1205 IPR027417 -
Adu04g02461 1751 MobiDBLite consensus disorder prediction 1588 1615 - -
Adu04g02461 1751 Pfam QLQ 457 491 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu04g02461 1751 SMART QLQ_2 456 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu04g02461 1751 MobiDBLite consensus disorder prediction 1 54 - -
Adu04g02461 1751 SMART helicmild6 1333 1417 IPR001650 -
Adu04g02461 1751 Gene3D - 776 850 - -
Adu04g02461 1751 ProSiteProfiles QLQ domain profile. 457 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu04g02461 1751 PANTHER ATP-DEPENDENT HELICASE BRM 30 1734 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02461 Adu-Chr4 109619139 109630003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02461 957 1458 RAD5 or RAD16-like Gene Family AT1G02670 25.610 3.39e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu04g02461 SNF2_N 1.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02461 - - gmx:100811608 2509.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02461 04 109619139 109630003 Adu04g02461 04 109619139 109630003 ECH
Adu04g02461 04 109619139 109630003 Adu02g00050 02 621194 631233 PCT