Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02430 ATGAATACTTGTTTTCATTCCCTGGATAACATAACACCCTGGAGAGATGACTGGAGAATAAGAGTCAGGATTAACAGGGTATGGTCTGCTTCATATGGTGCTCGAACAAGAGATGACAATCTGATACACATGGTGTTAATGGATGATAAGTTAACAAAAATTGAAGCAACTATCACACAGTCTCTAATTCCATATTTTAATGAAGTTCTAGAAGAAGGTGATGTTTATGTGATTGCACATTTTACTGTGGTTCCAAACTCTGGGTTAACTAGGTTGACAAAGCACCGCTTTAGGATTATTTTCCATAGCAAAACAATTGTTGTACCAACCATGTCTATTGGTATGCCCAATGCTGCATTTAAGTTTACTTCAATCGATGAAGTAGTTGAGAAGAGATGTAATGAAGATTTCTTGATAGATTTCATTGGGTTCATAGTTGGCGTACGTCAAGAAGCTGATATTGGTTCAGATGGGGAAAGAATGAAAGTTATAATCTTGGAAGTTGTTTCAGACGGGAAGAAGAAGATACAGTGTAATCTTATTGAAAGATCGTGTGAGGTATTTGATTTGTCTATGTTAAGAAAATATCAAAGACCACCAGTTGTGGTGCTAGAGGCTTTCAAGATTAAAGTCTTTGGAGCCAGTGTTGGTGATGATTCCGTTGACTGGAGAGCTATTCGGTCTATTGATCAACTAAAGAAAAACTGTCAGGATGGAATTTTCTATGTTATGGGAACAATTACAGAGGTTGTTGATGATTCAAATTGGTGGTACCATTCCTGTGTTTGTGGAAATGCTGTTGTTGCCGATGATAATAGTTATCATTGTGATATTTGTGACTCATGTGTGGAGCATGTGGTTTTAAAGTATAGAATAACTGTCATTGTTGATGATGGAACATCATCTGCAGCATTCGCACTTGTTGATAATGCTGCAACAAAGTTATTTGGGAAAACCTGTGCTGAAGCTTTCTTGCATATGGAGAAAGAATTACACCTAGATTGGAGTGATATTTCAAGGGTTGATCAATCTAGCAGGGTTCCCCTATTCCATCGAATTATTGGAACTAAGATAGTGTTCAAAGTTAAGATGCACAGTGTTTTCGGACCACATTATTCTGATCAATTCAAAGTTGTTAACCTCTTTGGTGATGTAGCTGAACCATGTTTGCCTGTTCAAAGTCTTAATAAATTTATCCATTGCCCAATCTTCAACCCAATATATCCAAGTTATTCAGCAGCTTCGTGTATTCAGAATTCAAGATGTCAAATTAGTTCGTCTGGTTTGATAGAAACTGAACCTATCGGGGAGATGCTTGGGGAGATTATCTCACTATGCTTTTCTCAACGAATTCCTGAAATTGAATCACTGAAAATCCTTGTTGGCACTATTTCGTATGTCTTTGAGGATCATGAGTGGTGGTTAGCGACTTGTTTATGTGGTTCAGCTGTTTCGGTTGTGAATGGTTCACCCTATTGTGTAATGTGCCAAATTGACTGTGTTGACACTATACCAAAGTACTCATTGAAGGTAATCGTGTCTTATAGAACTAGAAATAATATCTTAGTCCTTGGAGATTCTTTGGTTGCACGAATTTTGATGAAAAAATGTGCAACTCTGCTGGAAGAAAATCCAATTTCAGGACAGACTTTGGACAAGAAGATTGTTCCACAGGATATTATTTCTCATCTAATCGAAAAAAAATTTGCATTCATTGTTGATCCCAGGATTGTTGGATATGAGCTGAACATGGGTGTTTATATTGTAAGAGATTTCACAGATGAAAGTTGTATTGTTACTCTTTTGGAAAGTGTTACTCAGATAACTGATTAA 1833 0.3682 MNTCFHSLDNITPWRDDWRIRVRINRVWSASYGARTRDDNLIHMVLMDDKLTKIEATITQSLIPYFNEVLEEGDVYVIAHFTVVPNSGLTRLTKHRFRIIFHSKTIVVPTMSIGMPNAAFKFTSIDEVVEKRCNEDFLIDFIGFIVGVRQEADIGSDGERMKVIILEVVSDGKKKIQCNLIERSCEVFDLSMLRKYQRPPVVVLEAFKIKVFGASVGDDSVDWRAIRSIDQLKKNCQDGIFYVMGTITEVVDDSNWWYHSCVCGNAVVADDNSYHCDICDSCVEHVVLKYRITVIVDDGTSSAAFALVDNAATKLFGKTCAEAFLHMEKELHLDWSDISRVDQSSRVPLFHRIIGTKIVFKVKMHSVFGPHYSDQFKVVNLFGDVAEPCLPVQSLNKFIHCPIFNPIYPSYSAASCIQNSRCQISSSGLIETEPIGEMLGEIISLCFSQRIPEIESLKILVGTISYVFEDHEWWLATCLCGSAVSVVNGSPYCVMCQIDCVDTIPKYSLKVIVSYRTRNNILVLGDSLVARILMKKCATLLEENPISGQTLDKKIVPQDIISHLIEKKFAFIVDPRIVGYELNMGVYIVRDFTDESCIVTLLESVTQITD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02430 610 CDD RPA1_DBD_C 241 363 IPR013955 -
Adu04g02430 610 Gene3D - 5 111 IPR012340 -
Adu04g02430 610 PANTHER REPLICATION FACTOR A 1, RFA1 10 183 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu04g02430 610 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Adu04g02430 610 CDD RPA1_DBD_A_like 19 107 - -
Adu04g02430 610 Pfam Replication factor-A C terminal domain 241 329 IPR013955 -
Adu04g02430 610 SUPERFAMILY Nucleic acid-binding proteins 234 364 IPR012340 -
Adu04g02430 610 SUPERFAMILY Nucleic acid-binding proteins 455 573 IPR012340 -
Adu04g02430 610 Gene3D - 448 595 IPR012340 -
Adu04g02430 610 Gene3D - 211 382 IPR012340 -
Adu04g02430 610 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 10 183 - -
Adu04g02430 610 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02430 Adu-Chr4 109121145 109124598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02430 1 317 Core DNA Replication Machinery Family AT5G61000 21.067 2.54e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02430 - - ahf:112696273 765.763