Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02429 atgcctcctccctttgattctatctctaagatccaccctccaagggaggcatggagactcaaagttagggtactaagaacttggattgttccttcttttagaaatcatgaagttgcaaattcaatggaaattgttcttgttgatggagattctaacaaaatacaagcaactgttaagaagcagctcataaataggtttaaagagagtattattgagggtcaaacataccgaatgtcatattttagtgttgttccaaaccagggcaattatagggcagcagaacatgagtttaagttggtttttcttaaccgtacaactgttattcctgtccctgacgatgatatcccaaagacatgtttcagtttctgtccctttgatgagcttttgaaaatgactgaagattatgtttacttagttgatgttattggtttgctgacttctgttggtgaagagaaagagtatgtgaaagatgcgaaagtgatgaagatgattgttcttgagttatcttcaaaagagttgacaatacgctgtgctctgtttggggagtatgtggatgaagtgcatcgtttcttaggttctggctatatggagcagccagttgttgtgatccaacttgccaaagttaaattctttagggGACAAGTTGGTCTCCAAAATGTTATGCATGCTACTCGGCTGTTCTTTAATCCAGATTTATGTGAAGTAGTTGATTTTAAAAATAGtatgattgaccaaggtatgaatggaacacagccattgtttattgctaatgagggcaagggtgtttcattggaagatgattttatgcggcttactagaagatgcactattgatgaactccatgataacaacgaggaggggtcttttgtggtttttggttttgtgagatcaattgtggatgagggaccttggtggtattcagcttgtgtttgtgggaagtcaattcagcctcaaggtggtgcatattattgtgatttttgtcagcactatgttaccaatgtgactcctagATATAGGATCAAAATAGCTGTTGAGGATGACAATGGACATGGTGTATTTGTGTTATTCGATCGCGAGGCTGCTTACTTATTGAAAAAATCGTGTGCTGATCTGTTTGGAGAAGTTCAGAAGGATGCAAATgttatttgtggagatagttatcctgtgatgttccagcaattggtgggtaaaaaattgctccttaagatagataccaagagtgttggtgtagacaagtattttggaactttctgtgtgagaagagtttgtgatgatgctgctattatttccatgtttgagttacctaactatgatgccgatgatgagtgcactccattgaagGATGGTAAGTTGGGAAAGATCCCTTCAGCTGGGGATGAACATATTGTTGACAAGAGAGAGCCCTGTGAGGTGCTACATGAGGGTATCACTCTTGATGGGAATTGTTCAAGTATGAAGACAAACTACAAGCCTTTGATTGATTTTCTTGGTGAAAAGCGTGCTGTAGTTCCTGGATTGGATGATATAAGTACTGAAATTGATATTCTAAGAGAGGCAGGGAAAAGTGTTGATGATAGTGTACTTGTTGATGGGGAGTGCAGTTTGGAAATTGAGGGTCTCTTGAATTCTCCCCCCGTGGAAACTACGGATGTACTTTCTGCTGTTCTTGATGGATCCCCTGTTCACGTGATCAAGAAAGAGAATGTTTCCAATGTGCCAAGGGGTAGAAAAGCTAAAAGAAATCTGAAAAAATCATTTGATGATGCTGCTGATGAGGAACTTGGCCCAACTTCCAAGGTTCTCAAGAACCGTGATGTTTGA 1821 0.1549 MPPPFDSISKIHPPREAWRLKVRVLRTWIVPSFRNHEVANSMEIVLVDGDSNKIQATVKKQLINRFKESIIEGQTYRMSYFSVVPNQGNYRAAEHEFKLVFLNRTTVIPVPDDDIPKTCFSFCPFDELLKMTEDYVYLVDVIGLLTSVGEEKEYVKDAKVMKMIVLELSSKELTIRCALFGEYVDEVHRFLGSGYMEQPVVVIQLAKVKFFRGQVGLQNVMHATRLFFNPDLCEVVDFKNSMIDQGMNGTQPLFIANEGKGVSLEDDFMRLTRRCTIDELHDNNEEGSFVVFGFVRSIVDEGPWWYSACVCGKSIQPQGGAYYCDFCQHYVTNVTPRYRIKIAVEDDNGHGVFVLFDREAAYLLKKSCADLFGEVQKDANVICGDSYPVMFQQLVGKKLLLKIDTKSVGVDKYFGTFCVRRVCDDAAIISMFELPNYDADDECTPLKDGKLGKIPSAGDEHIVDKREPCEVLHEGITLDGNCSSMKTNYKPLIDFLGEKRAVVPGLDDISTEIDILREAGKSVDDSVLVDGECSLEIEGLLNSPPVETTDVLSAVLDGSPVHVIKKENVSNVPRGRKAKRNLKKSFDDAADEELGPTSKVLKNRDV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02429 606 Gene3D - 265 428 IPR012340 -
Adu04g02429 606 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu04g02429 606 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Adu04g02429 606 CDD RPA1_DBD_A_like 19 107 - -
Adu04g02429 606 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Adu04g02429 606 CDD RPA1_DBD_C 280 413 IPR013955 -
Adu04g02429 606 Pfam Replication factor-A C terminal domain 291 380 IPR013955 -
Adu04g02429 606 Gene3D - 4 113 IPR012340 -
Adu04g02429 606 SUPERFAMILY Nucleic acid-binding proteins 3 114 IPR012340 -
Adu04g02429 606 SUPERFAMILY Nucleic acid-binding proteins 272 405 IPR012340 -
Adu04g02429 606 CDD RPA1_DBD_B_like 140 243 - -
Adu04g02429 606 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Adu04g02429 606 Gene3D - 114 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02429 Adu-Chr4 109109224 109113527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02429 8 373 Core DNA Replication Machinery Family AT2G06510 22.656 4.18e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02429 - - aip:107647213 687.567