Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02407 ATGGCAACTGATATGCAGAGGCTTATTGGAACCAGCGAAGATGATGATGAAGAAATAGAGATGGATGTGAAAGAAGAGGATGATGAGGATGGAGATGAAGAGGAAAATGGAGGTGATCATGGAAATGCTTCGGAGATGGTAGGGATTGATGGTGGGAATGGTTTAGTGACTGCTGGTGGTGACAACAGTTTTCAACAGCAACAGCAGTTTCAAGAACAAGTTGGAACCCCAGGTGGATCTGCTCGAAGATGTAGACCACTAGAAGAGAAAGAACGGACAAAGCTAAGAGAGAGGCGCCGGAGGGCTATCACTGCTAAGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAATCTTAGAGTTAGAGCAGACATAAATGATGTTATTGCTGCTTTAGCAAGGGAAGCTGGGTGGGTGGTTCTTCCTGATGGCACTACTTTTCCTCCAAGATCCCAGGGTCAAAGGCCAACTGGTGGTAATTCTGCAGTTGTCACTCCATCTTCTCCAGTGCCTTCACAACCAACTCCATCTGCTTCCATCAGGGGAGTTGCTTCTGGCTATAGGAGCTCATTAGAGTATAATACATGTCAAACAAAAGGTGTTTTCATGCCAACTCCATCTCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAACATCCATGGTGGGGGATGGAGAGTTACAGAGAGACAATCAACCTTTGGTTGGCAGTGGTTCAATGGATACTGTTCATGAGAAGCAGATTATTGACTTGCCCTGCAGATTATCAGAGCGTGATCTGGCCGGTACTCCATATGTTCCAGTGTATGTGATGCTACCGTTAGGAGTGATCAATATAAAGTGTGAGCTTGTTGATCCAGATGGTCTACTAAAGCAGCTGAAAGTATTGAAATCAATAAACGTTGATGGTGTTACGGTTAATTGTTGGTGGGGAATAGTAGAAGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAGATGGTGCATGAGCTGAAGCTTAAGCTGCAGGTTGTGATGTCGTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGCATTCCTTTGCCCCATTGGGTTGCAGAAATTGGTAGGACCAATCCTGATATCTTCTTCACTGACAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAGTAGATAAGGAACGGGTATTAAGAGGTCGGACTGCCTTAGAGGTCTATTTTGATTTCATGAGAAGTTTCCGGGTAGAATTTGATGAGTATTTTGAGGACAGTTTCATCTCTATGATTGAAGTTGGACTTGGTCCGTGCGGAGAGCTAAGATATCCATCTTGTCCTGTAAAACATGGTTGGAGATATCCTGGTGTTGGTGAGTTCCAGTGTTATGATCAATACATGTTGAAAAGTCTCAAGAAAGCAGCCGAAGCACGGGGACACTCTATTTGGGTTAGGGGACCAGATAATGCGGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGCGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTCCTTAATTGGTATTCTAAGGTTTTAGTTGATCATGGAAACGGGGTACTTTCTCTGGCGAAATTAGCTTTCGAGGGATCCTGCATTGCTGCAAAGTTGGCAAATATTTACTGGTGGTACAAGACTGCTAGTCATGCTGCTGAATTAACTGCTGGGTATTATAACCCATGTAATCGCGATGGCTATGCAGCTATTATGGAAATGTTAAAGAGCAATGGAGTTAGCTTGAACATTGCTTGTGCCGACTTGAACACATTGAACCAGCTTGAGGTCTTTCCAAAGGCATTCGCTGACCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCAGGTTGGGATCTTGGCTTACCAGTTGCCGGTGAGAATGCACTTCCTTGCCTAAACAGAGTTACCTATAACAAGGCTTTGGATAGTGCCAAACCCATGAATGATCCAGATGGAAGGCACTTTTCTTCCTTCACTTACCTAAGGCTTAGTCCATTACTTATGGAACAGCAAAACCTACGAGAGTTTGAACGATTTATCAAGAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTTCATTGGCTCAGCTCAATGACCAAGGAAGAACAAGTGTTTGAGTTCCTCGGGTGTGTTCCTCTGCTACAGAGACTTCCTAGCTCCTCCGTCAGGAAGATTTCTCAGCTTGTGATTGTTAAGCACTATGAGCCCGGAGATTATGTTGTTCGTGAGGGGGAACCTGCAGATGGGCTTTACTTCATATTTGAAGGAGAGGCTGAAGTTATTGGATCGGATAGAACTGATGATGAAAATCATCCAGAATTTCTATTAAAAAGATATGACTATTTTGGTTATGGTCTAGCAAATGCTGTTCATCAAGCTGATGTCATAGCTCTGACTAAGTTGTCATGTTTATTGCTGCTTCATGAGCACTCAGCACTGCTACAGCCAAATTCTATTTGGAGTGAAGAAAAATCTGTTGATACATGCTCGCTAGTGGAGCATATATTGCATTTGGAGCCTATAGAGGTAGATATCTTCCGAGGAATCACCCCTCCAAAGGCTCCGAAATTCGGGAAGGTGTTTGGTGGACAGACGGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTTGGGGATTTTAACATGCCAATTATATATCAAGTTCATAGACTCCGTGAAGGGAAGAGCTTTGCCACAAGGAGAGTGGATGCAATTCAAAAGGGAAATATCATTTTCACATTGATGGCTTCATTTCAAAAAGAGGAAATTGGGTTTGAACACCAGGAAGTGACTATGCCATCTGTCCCTAATCCAGATGAGGCAAGTACCAAGCTTACACTTCTTTCAATGGAAGAGTTACGGGAACAACGTCTTACTGACCCACGTCTCCCAAGAACTTACCGTAACAAGGTTGCTACATCCGAGTTCATTCCCTGGCCCATAGAGATAAGGTTCTGTGAGCCAAAAACTAAAACAACTCAGACCAAATCTCCTCCCAGCTTGAGATACTGGTTTAGAGCAAAGGGGAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTGGTGGCATATGCTTCTGATCTGATATTTCTTCAAGTTAGCTTAAACCCTCATCGTCGAAAGGGCTTCAAGGCCCGGGCTGTTAGCCTAGACCACTCGATGTGGTTTCATCGCCCTCTAAGAGCTGATGACTGGGTTCTATTTGTGATCTTTTCTCCTAGTACCTCCAATGCGCGTGGCTATGTCTCAGGCCAAATGTTCAATCAGAAGGGAGAAGTAAGGGATTTTGTTCCAAATTCAGCCATCAAATCTAAGTTGTGA 3402 0.44 MATDMQRLIGTSEDDDEEIEMDVKEEDDEDGDEEENGGDHGNASEMVGIDGGNGLVTAGGDNSFQQQQQFQEQVGTPGGSARRCRPLEEKERTKLRERRRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPPRSQGQRPTGGNSAVVTPSSPVPSQPTPSASIRGVASGYRSSLEYNTCQTKGVFMPTPSPYDLSSSSRSQTSMVGDGELQRDNQPLVGSGSMDTVHEKQIIDLPCRLSERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLKVLKSINVDGVTVNCWWGIVEAHAPQEYNWNGYKRLFQMVHELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRTNPDIFFTDREGRHNPECLSWGVDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDSFISMIEVGLGPCGELRYPSCPVKHGWRYPGVGEFQCYDQYMLKSLKKAAEARGHSIWVRGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLNWYSKVLVDHGNGVLSLAKLAFEGSCIAAKLANIYWWYKTASHAAELTAGYYNPCNRDGYAAIMEMLKSNGVSLNIACADLNTLNQLEVFPKAFADPEGLVWQVLNAGWDLGLPVAGENALPCLNRVTYNKALDSAKPMNDPDGRHFSSFTYLRLSPLLMEQQNLREFERFIKRMHGEAVLDLQVHWLSSMTKEEQVFEFLGCVPLLQRLPSSSVRKISQLVIVKHYEPGDYVVREGEPADGLYFIFEGEAEVIGSDRTDDENHPEFLLKRYDYFGYGLANAVHQADVIALTKLSCLLLLHEHSALLQPNSIWSEEKSVDTCSLVEHILHLEPIEVDIFRGITPPKAPKFGKVFGGQTVGQALAAASKSVDCLKVVHSLHAYFLLVGDFNMPIIYQVHRLREGKSFATRRVDAIQKGNIIFTLMASFQKEEIGFEHQEVTMPSVPNPDEASTKLTLLSMEELREQRLTDPRLPRTYRNKVATSEFIPWPIEIRFCEPKTKTTQTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRRKGFKARAVSLDHSMWFHRPLRADDWVLFVIFSPSTSNARGYVSGQMFNQKGEVRDFVPNSAIKSKL 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 509 528 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 321 339 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 543 559 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 343 364 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 578 601 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 560 571 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 618 640 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 314 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 MobiDBLite consensus disorder prediction 145 181 - -
Adu04g02407 1133 SUPERFAMILY cAMP-binding domain-like 714 817 IPR018490 -
Adu04g02407 1133 CDD CAP_ED 724 808 IPR000595 -
Adu04g02407 1133 SMART cnmp_10 724 843 IPR000595 -
Adu04g02407 1133 Gene3D Jelly Rolls 722 824 IPR014710 -
Adu04g02407 1133 ProSiteProfiles cAMP/cGMP binding motif profile. 724 794 IPR000595 -
Adu04g02407 1133 Pfam Thioesterase-like superfamily 862 1119 - -
Adu04g02407 1133 SUPERFAMILY (Trans)glycosidases 262 700 IPR017853 -
Adu04g02407 1133 Pfam BES1/BZR1 plant transcription factor, N-terminal 81 216 IPR008540 -
Adu04g02407 1133 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 957 1119 IPR029069 -
Adu04g02407 1133 MobiDBLite consensus disorder prediction 1 96 - -
Adu04g02407 1133 Pfam Glycosyl hydrolase family 14 269 689 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 PANTHER - 78 703 IPR001554 GO:0000272|GO:0016161
Adu04g02407 1133 Pfam Cyclic nucleotide-binding domain 743 817 IPR000595 -
Adu04g02407 1133 CDD Thioesterase_II_repeat1 1028 1119 - -
Adu04g02407 1133 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 843 949 IPR029069 -
Adu04g02407 1133 MobiDBLite consensus disorder prediction 206 230 - -
Adu04g02407 1133 MobiDBLite consensus disorder prediction 11 36 - -
Adu04g02407 1133 CDD Thioesterase_II_repeat2 855 947 - -
Adu04g02407 1133 MobiDBLite consensus disorder prediction 58 76 - -
Adu04g02407 1133 Gene3D Glycosidases 256 720 - -
Adu04g02407 1133 Gene3D - 838 1121 IPR042171 -
Adu04g02407 1133 PANTHER BETA-AMYLASE 78 703 - -
Adu04g02407 1133 MobiDBLite consensus disorder prediction 147 181 - -
Adu04g02407 1133 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 751 767 IPR018488 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02407 Adu-Chr4 108342824 108354876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02407 1 700 Glycoside Hydrolase AT2G45880 64.915 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Adu04g02407 Glyco_hydro_14 2.3e-101 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02407 K01177 - gmx:100805560 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02407 04 108342824 108354876 Adu04g02407 04 108342824 108354876 ECH
Adu04g02407 04 108342824 108354876 Adu02g00031 02 397618 401028 PCT