Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02389 ATGAAGAAGAAGGGTGTGGATGAGTTCCCTTTCTGTGTCCACCTTGTTAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCCTGCAACAAGTATATGGCAAAGTTTGCCGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCCGATAGGCTTCAAACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGGACATGTGCCAGGGTGGCCATTGGGCAGGTCCTTCTTTCTGTTCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTATTAGCAGGAAGTGGGGATTCACCAAGTTTAGCCGAGCTGATTATCTGAAATTCAAGTCAGAGAATAGGATTATGCCTGATGGTGTGAATGCAAAGCTCCTTGGGTGCCATGGACCATTGGCTAATCGTCAACCTGGAAGAGCATTTTTGCCGCCCAGTGCAACCGCTTAG 558 0.4839 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIISRKWGFTKFSRADYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLPPSATA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02389 185 SUPERFAMILY Ribosomal protein L16p/L10e 3 139 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu04g02389 185 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Adu04g02389 185 PANTHER 60S RIBOSOMAL PROTEIN L10 1 179 IPR001197 GO:0003735|GO:0005840|GO:0006412
Adu04g02389 185 Gene3D - 142 177 - -
Adu04g02389 185 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Adu04g02389 185 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 179 - -
Adu04g02389 185 Gene3D Ribosomal protein L10e/L16 1 141 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu04g02389 185 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02389 Adu-Chr4 108081896 108084010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02389 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 86.885 9.61e-121 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02389 K02866 - gmx:100305619 365.925