Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02378 ATGAACAACAATAGAGCGCGGTACCCACCTGGGATCGGATTAGGTCGTGGAAATGGTGGTTTCAACACTGGGTTTCAACCAAGGCCACCTCAACAACAGTATGTGCAAAGGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGCACTATCAGCAGAATCAGCAACAACATCAACAGCAGCAGCAACAACAACAACAACAGCAACAACAATGGTTGAGAAGGACCCAATTGGGTGGCGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCTGAAGCCGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGGTTCCACCGCCTGATACACGCTATAAGACTGAGGATGTAACGGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAGAGACCTTCACCAATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCCTTGCAGACTTCTCAAGTGTGTAAAGAACTCGGAAAACATTTGAAAATTCAGGTTATGGTAACCACTGGTGGTACCAGCCTAAAAGATGACATTATGCGTTTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTGGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATCACACAGTATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCACGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGACACCTTGGTTTAGCAGTAAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTTGGCACTGAAATAAAACAAATTCCACCACATATTGATCAGGCTATATATTGCCGGTGA 1548 0.3941 MNNNRARYPPGIGLGRGNGGFNTGFQPRPPQQQYVQRHXXXXXXXXXXXXXXXXXXXQHYQQNQQQHQQQQQQQQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02378 515 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Adu04g02378 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Adu04g02378 515 Gene3D - 93 345 IPR027417 -
Adu04g02378 515 SMART helicmild6 392 473 IPR001650 -
Adu04g02378 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
Adu04g02378 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 512 IPR001650 -
Adu04g02378 515 CDD SF2_C_DEAD 353 482 - -
Adu04g02378 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 515 - -
Adu04g02378 515 CDD DEADc_DDX6 143 343 - -
Adu04g02378 515 Pfam Helicase conserved C-terminal domain 367 473 IPR001650 -
Adu04g02378 515 Coils Coil 58 80 - -
Adu04g02378 515 MobiDBLite consensus disorder prediction 57 114 - -
Adu04g02378 515 MobiDBLite consensus disorder prediction 1 132 - -
Adu04g02378 515 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Adu04g02378 515 SMART ultradead3 160 356 IPR014001 -
Adu04g02378 515 Coils Coil 35 38 - -
Adu04g02378 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 4 515 - -
Adu04g02378 515 Gene3D - 346 515 IPR027417 -
Adu04g02378 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 495 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02378 Adu-Chr4 107930997 107936708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02378 141 512 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 9.05e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02378 K12614 - tcc:18614173 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02378 04 107930997 107936708 Adu04g02378 04 107930997 107936708 ECH