Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02258 ATGATAAGAAGGAAGATGGTAAGAGGAAAGACTCAGATGAGGCGCATAGAGAATGCAACAAGCAGGCAAGTAACATTCTCAAAGAGGCGTAACGGTTTGCTTAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTTCTAGCTCCAGCATGCAAGAGACAATTGAACGCTATCGCAGACATACACGGAATGCTCAAACAACACCTAGATCAGATGAACAAAATACGCAGCATTTGAAGCAAGAAACGGCAAGTTTGATGAAGAAGATTGAGATTCTTGAAGCTTCAAAACGAAAATTGGTGGGAGAAGGTTTGGGATCATGTACCTTAGAAGAGTTACAACAAATAGAACAACAATTGGAAAAGAGTGTAACCAGTGTTAGAGCTAGAAAGACTCAGGTTTACAAGGAACAAATTGAGCAACTAAAGGAAAAGGAAAAAGCTCTAATTGCTGAAAATATCAAGCTTTCAGAACAGTATGGCATCCAAGCACCACAGGCAATTCTAAAGGATCAAAAAGAAAATGAACAACCCTACCCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTATTCATTGGACTACATAGGTCTAGTTGA 654 0.396 MIRRKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETIERYRRHTRNAQTTPRSDEQNTQHLKQETASLMKKIEILEASKRKLVGEGLGSCTLEELQQIEQQLEKSVTSVRARKTQVYKEQIEQLKEKEKALIAENIKLSEQYGIQAPQAILKDQKENEQPYPESSSPSSDVETELFIGLHRSS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02258 217 Pfam K-box region 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu04g02258 217 Coils Coil 126 146 - -
Adu04g02258 217 MobiDBLite consensus disorder prediction 182 208 - -
Adu04g02258 217 CDD MADS_MEF2_like 8 83 IPR033896 GO:0000977|GO:0045944
Adu04g02258 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 PANTHER MADS-BOX PROTEIN SOC1 6 214 - -
Adu04g02258 217 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 PANTHER MADS BOX PROTEIN 6 214 - -
Adu04g02258 217 SUPERFAMILY SRF-like 8 88 IPR036879 GO:0003677|GO:0046983
Adu04g02258 217 Gene3D - 19 101 IPR036879 GO:0003677|GO:0046983
Adu04g02258 217 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 Coils Coil 148 175 - -
Adu04g02258 217 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Adu04g02258 217 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02258 Adu-Chr4 105509615 105517642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02258 6 163 MADS-box Gene Family AT2G45660 77.848 8.50e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu04g02258 K-box 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02258 - - gmx:100037477 302.367