Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02253 ATGCCATTATGCAGGTTCGGATACACAAACTCTACATGCCAGGCTTACACAAAGACTCCGAATTTCTCCTCATGGAACTGCATGCAGTGTTTGCAAGCAGAATGTGCATTTTGTAGCAGCAGTAGTGGTGAAGCACACTACATAAAGTCGAGACACTGTAACACTGCAAAAGCTGTTCTTGCCTTAGACTCTTCATACAGATGGGCGCTTAGTGGCACCCCCTGCAGAACCGTGTTGGAGAGCTGTATTCTCTGGACTGTGATTGCCGGGCTCTTGATCACAGCTCCTCTAAACAATGTTCAGCCTGTGGTCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAAAAGAGCTATGAAGATACTGCTTAAGAACAAAATTTTAAAGAACATAGTTCTAAGGCGAACTAAAACAGGCAGGGCTGCTGATCTTGCACTACCACCTAGAATTGTAAGTTCCTGTTGCTCATATGGTTAG 477 0.4423 MPLCRFGYTNSTCQAYTKTPNFSSWNCMQCLQAECAFCSSSSGEAHYIKSRHCNTAKAVLALDSSYRWALSGTPCRTVLESCILWTVIAGLLITAPLNNVQPVVTVLLDIFVGGTKRAMKILLKNKILKNIVLRRTKTGRAADLALPPRIVSSCCSYG 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02253 158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 147 IPR027417 -
Adu04g02253 158 Pfam SNF2-related domain 44 149 IPR000330 GO:0005524|GO:0140658
Adu04g02253 158 Gene3D - 42 154 IPR038718 -
Adu04g02253 158 PANTHER BNAA08G28190D PROTEIN 115 152 - -
Adu04g02253 158 PANTHER BNAA08G28190D PROTEIN 44 96 - -
Adu04g02253 158 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 115 152 - -
Adu04g02253 158 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 44 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02253 Adu-Chr4 105450026 105451451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02253 43 152 RAD5 or RAD16-like Gene Family AT1G05120 42.759 8.26e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu04g02253 SNF2_N 1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02253 K15083 - gmx:100786366 96.2857