Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02172 ATGTCTGCGAATTCCGAGAATGTTGGGGTTTGTTCTCTTTGCCAGAAGGCATTATCTCCTGATAATGAGATGACAAGTGATCCTGCAACAGTTGGTGTATGTGGTGATTGTAAATTTTTATTGCTCGAGGACTATGGGAATCATATGGTTACCCCTCAGAGCATGCAAAGAAGGTTTAGAGGCCGGTTCAGGCGCAACAGCTCTGAGTCGGTTGACAACATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAATTGTGGAGGGGGATGCCGCTGCTTGGTCGACGCAGCATGCTAGTTTACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGCGATGGTTTTGATAATTGGAGCTCACTTTACGGTGAAAATGAATCAAATGAAAGCTTTAGACGGTATAGGATTCCTCATGGTGAGACTGATTCCCTCTCTTTCAGTGTTTATGGAGGTGACTCAGATGTCTCTGTGGATAGACATAGTATTATACATAGAGGAATGTTTGGTTTACCGGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCTGGTGTCAGTCACTGGCACTCAGATGATATGGAAGATGATGAGGAAGAGGAGGAGGACAATGAGGACGACGATGATGATGAGGAGGAGGAAGAGGATGTCGAACGGGAATGGGAAATAGCTGATGCTGTAGAAGCGGAAGCCACAGCTCGCCTTCAAATGTTTTTCACCTCAAATTCGAGTGCGAGTAGGGGTAGCAATGTACGGATACAAAGGTTTGATTCCGCTGAATCTGAGGTGGTCCAAATGGTCAGTAACTGGGGAGCTGACTTGGAGGATACTGGCTTACATCCCTATGGTGCCAACTTTGGGGACTATCTCGATGCTAGACAATTCGAAGATTTTCTTGAGCATCTTGCTGAGAATGACAATTCGAGACGAGGAGCACCCCCTGCATCTTTGTCATTTGTGAACAATCTTCCCCGCGTAGTCGTTGACAAGGACCATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGCATTGGTACTTGGGACTGAAGCTAGTCAGCTTCCATGCTCTCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGTCGCTATGAGCTTCCAACTGATGACAAAGATTACGAAGAGGGAAAGCAGAACGGTGTTCTTCAACATGTAAACCATGACAGGCAGCAACTAGAGATGGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGAAGTAAACGAAGCAGATAGTATTAGTCAAAGTGTAATACATCATACAGAAGTTGTAAGTTCGAATTCTTCCACAAATTCTTCGGCGGTAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTGCTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGGGAATAGGCATCTCAGCGGGCGCAACATGTCCGCACAAGATCATCATACGGTTAATGTTTATGCCACACCCGTCCAAAGGGAGAGCAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1644 0.4574 MSANSENVGVCSLCQKALSPDNEMTSDPATVGVCGDCKFLLLEDYGNHMVTPQSMQRRFRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQIVEGDAAAWSTQHASLHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRRYRIPHGETDSLSFSVYGGDSDVSVDRHSIIHRGMFGLPDVGDEFDSDTDIDPMHAGVSHWHSDDMEDDEEEEEDNEDDDDDEEEEEDVEREWEIADAVEAEATARLQMFFTSNSSASRGSNVRIQRFDSAESEVVQMVSNWGADLEDTGLHPYGANFGDYLDARQFEDFLEHLAENDNSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVLGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNGVLQHVNHDRQQLEMVDVDDSSSDVSVLAEVNEADSISQSVIHHTEVVSSNSSTNSSAVRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEGNRHLSGRNMSAQDHHTVNVYATPVQRESRSRRWWCPF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02172 547 MobiDBLite consensus disorder prediction 213 239 - -
Adu04g02172 547 Coils Coil 214 234 - -
Adu04g02172 547 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Adu04g02172 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 407 IPR013083 -
Adu04g02172 547 PANTHER OS06G0101300 PROTEIN 273 448 - -
Adu04g02172 547 MobiDBLite consensus disorder prediction 192 239 - -
Adu04g02172 547 SUPERFAMILY RING/U-box 342 407 - -
Adu04g02172 547 Pfam Ring finger domain 360 401 IPR001841 -
Adu04g02172 547 MobiDBLite consensus disorder prediction 196 212 - -
Adu04g02172 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 273 448 - -
Adu04g02172 547 SMART ring_2 360 400 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02172 Adu-Chr4 103414232 103416947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02172 1 547 C3H Transcription Factor Family AT5G01980 39.895 8.25e-112 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02172 - - gmx:100800933 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02172 04 103414232 103416947 Adu04g02172 04 103414232 103416947 ECH