Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02139 ATGCTTTGCGCTTCATTGTGTTTAGTTTGTGATTTTATTGAAGATTTCAATAGTAATATAGTGGCAGAGGCAGTGCTGAAAGCCTCAACCTTCTCTGTTGCCGCCTCTCGCTGGCCCACGTCTCATCGCTGCGCTGCTCAAGTCTTCCTCTGCATCACCGCTCTCCTCGTGTCTTCCGCTGTGCCTCGCTGTGTCTTGGTTCTCTGTCTCCCTCTTCTCTGCGTCTGGCCAAGCTGCAATGGTTACTTTTTGCTGATTCTGACCCTCTCTGCCTCGTGCTTCCTCTGGCTTTGGTTCTGTGATCGGAATACTGTGACATTTTATTGGAACACTGAGGCTTTTGTTCTGCTTCTGAACTTCGCAGAGgatcgggtcaaccgCAAAGCCAAAATGCTCTCCAAACTACGATTCCTGAACCACTTCGTCCACAAGAATCTTTCTACACGAACCACCGCTTTCAGTGGCTTCTACCGCTTCTCCAACAGCGGCGCTTTCTGCACCGTGGCTGATTCAACCACACAGCCAACCCCCGAGTCGTACGAACTCCCTGATTGGGTCAAATTCTCTGACAACCCAACCTCTCCCAATGGCGACTATGACGAAGACTTTGTTATCCCTTCACTTGCTCCTTGGGTCGACGGCCACCTCCTTCATCCCACTCCCAAATTTGTCATCACCCCAACTTCCCAGCCAAACAACCTTGAAGAGGTCGAAGCAATCACCACCCTTCTAAAGGAAAAGCACCCATCTCCTGAGAAAGTTGCTGAAGCACTTGCTCAACTGAGTGGTTTTAAGGTTTCAAAAGGTTATGAGCATTCTCCTCAACTATACAATTTCATGGTCGATATCCTGGCAAAGTCAAAGAATTTCGATCTCATGTGGGAGTTAGTGGAGGAAATGGCTCATCTTCAACAAGGGTATGTTACCTCGGACACATTGGTTAAGGTTATGAGGAGGCTTGCAAAGGCTGGCAAGCATGAATATGCCATTGAAGTGTTTCGCAGAATGGGGAAGTTTGGTGTCAAACAGGACACAGCAATGTTGAATGCTCTCATGGACGCATTGGTGAAAGGGAATAGTGTTGAGCATGCCCATGATGCTCTTTTGGAGTTCAAGGGTTCGGTTCCCTTGAATTCCCATTCTTTCAATGTTTTGATACATGGGTGGTGCAAAGTTAGGAAATTTGAATGGGCCAAGAAAGCAATGGAGGACATGAAGGAACATGGGTTTCACCCCGATGCGTTCTCATACACTACTTTCGTCGAATCATATTGCCGCGAGAAGGATTTTCGCAAAGTGGACCGAGTTATGGAGGAGATGAGGAAAAATGGTTGCACCCCTAATGCTGTGACTTACACAATTGTGATGCTTGCTCTTGGGAAGGCAGGGCAGCTCAAAGAAGCTTTGGAGTTGTATGAGAAGATGAAGGTTGATGGGGGTGTGCCTGACACTGCATTTTATAGCTCCTTGATATTCATTCTTGGCAAAGCTGGTAGGATTAAAGATGCTCGTGATGTGTTTGAGGATATGCCAAAGCAAGGTGTTGTGAGGGATGTGATGACTTACAATACTATGATTAGTATTGCTTGTACTCACCAGAGGGAAGAGACTGCCCTGAGGTTGCTCAAGGAGATGGAAGATAGCACATGTAAGCCTGACCTTGAGACATATCATCCATTGTTGAAGATGTGCTGCAGGAAGAAGAGGATGAAGGTGCTCAGGTTTCTGTTGGATCACATGTTGAGAAATGATTTAAGCCCTGAAGTGGGAACTTACACGCTTTTGGTGCATGGTATGTGTAGAAGCGGAAAGCTTGAGAGCGCTTGCTCATTCTTTGAGGAGATGGTGTTGCAGGGATTAACCCCACAGGAAGTCACGCGGAAGCTCCTGCTGGGAGAACTCGAGTCCAAGAACATGATCAAAGAGAAACAACACATCGAGGATTTGATGGCACGGCACTGTTTCTTGTTACTGCATTCTAACTGTCTTCAAATATATTATTCTTCTTTCCAACCTCATTTTAAGGAAATTAACCAAGTGGTGGAGTCACTGAACTTGATGATGCTACAACATTCAAACATCTTCATAGAACAAGATTTTCTGCTTCTGATTCAGATTCTTGTTCTTGTTCTTCTTCTCTTCCCTCAAACTACAATATCTGATCTACATTCAGAAAAGCAAGCACTCCTTGATTTTGCATCAGCATTTCACCATGGCAAAAAGGTGAATTGGAACATGAACACTTCAATGTGCAATTCATGGAATGGAGTTACCTGCAATCCCAAGGGCACAAATGTAATTTCACTGAGGCTACCAGGTGTTGGTTTGAGAGGTTCTCTGCCACCAAACACAATTGGTAAGCTCAATGGCCTCACAAGTCTTAGTCTAAGGTCTAACACATTGAGTGGCAAAATCCCAAATGACATTCTTGCCCTTCATTCCCTAAGGTTTCTATATCTTCAACATAACAATTTCTCAGGTGAATTTCCAAATTTTCTTCCACCTAGGCTTGTGCTTCTTGATTTGTCACATAACTCTTTCACAGGACAAATTTCAAACTCAATCCAAAATTTGACTAATCTAACTGGTTTGTTCCTCAAGAACAATTCACTTATAGGGCCTATTCCTAATGTAACCCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTTAACAACCTTAATGGTTCAATTCCTTTAGCATTTCATAGGTTTCAATCTTCATCATTTGATGGGAATTTGATGCTATGTGGACCACCTTTGACAAAACAATGTTCCTCATCAAGTCCTCTTAGTAGTCCAATGTTGTCTCCACTAATAGTATCTCAAAATTCAAGTGATGTTTCCAAGAAGAGGCCAATTCTTGGGGTGGTGGTCGCTGCCGCCTTGGGAGGTTTCGGACTACTTTTTCTACTAGTTTTGATGTTGGTGTTGTATTTTCTTAAGAAGAGAGTTGGTGAACAAAATGAGGCACCAAAAGCAAGTAAACTTGGTGAGAATCTTAGGGAGGATTTTGGGAGTGGTGTGCAAGAACCTGAGAAGAACAAGTTGGTATTTTTCGGAGGGTGTTCTTATAACTTTGATCTTGAGGATTTGTTAAGAGCTTCAGCTGAAGTTCTTGGTAAGGGAAGTTGTGGAACAACTTATAAGGCAGTCTTGGAAGAAGGGACAGTAGTTGTTGTTAAGAGGCTGAAGGAAGTTGCAATTGGGAAGAGAGAATTTGAACAGCAAATGGAAACTGTGCAAAAGCTTGATCAGCATCCAAATGTTGTTCCATTTAGTGCTTACTATTATTCCAAGGATGAGAAGCTAGTGGTTTATGATTACCTACCATTTGGAAGCTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGAAGAACTCCACTAGATTGGGACACCAGATTGAAGATAATGCTTGGAGCTGCTAAGGGTGTTGCTCATATTCATTCTGCAAGTGGAAGGAAATTTGTCCATGGCAATATAAAATCATGTAATGTGCTACTCTTAGGTGATCTACAAGGCTGCATATCGGATTTCGGCTTAGCTCCTCTAGCGAGTTTCTCAGGCTCCTTTAGGAGTCCTGGATATCGAGCCCCCGAGGTTATTGAGACCCAAAAATCCACACAAAAATCTGATGTGTACAGCTTTGGGGTTCTCCTTCTTGAGATGTTGACCGGCAAAACACCGATTCAGTATTCAGGACATGATGATCCGGTTGATCTTCCGAGGTGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAATATTGAGGAAGAATTGGTGCAAATGCTGCAACTTTCAATGGCATGTGTTGCAATGGTTCCTGACACAAGACCCTCAATGGAGGAAGTTGTAAGGGTTATTGAAGAAATCATAGGATCCTATTCTGAGAACCAGACATCATTATCAGACAAGTTCAAGGGAACTCATGATTTCATTCCATACTACTGA 3987 0.4327 MLCASLCLVCDFIEDFNSNIVAEAVLKASTFSVAASRWPTSHRCAAQVFLCITALLVSSAVPRCVLVLCLPLLCVWPSCNGYFLLILTLSASCFLWLWFCDRNTVTFYWNTEAFVLLLNFAEDRVNRKAKMLSKLRFLNHFVHKNLSTRTTAFSGFYRFSNSGAFCTVADSTTQPTPESYELPDWVKFSDNPTSPNGDYDEDFVIPSLAPWVDGHLLHPTPKFVITPTSQPNNLEEVEAITTLLKEKHPSPEKVAEALAQLSGFKVSKGYEHSPQLYNFMVDILAKSKNFDLMWELVEEMAHLQQGYVTSDTLVKVMRRLAKAGKHEYAIEVFRRMGKFGVKQDTAMLNALMDALVKGNSVEHAHDALLEFKGSVPLNSHSFNVLIHGWCKVRKFEWAKKAMEDMKEHGFHPDAFSYTTFVESYCREKDFRKVDRVMEEMRKNGCTPNAVTYTIVMLALGKAGQLKEALELYEKMKVDGGVPDTAFYSSLIFILGKAGRIKDARDVFEDMPKQGVVRDVMTYNTMISIACTHQREETALRLLKEMEDSTCKPDLETYHPLLKMCCRKKRMKVLRFLLDHMLRNDLSPEVGTYTLLVHGMCRSGKLESACSFFEEMVLQGLTPQEVTRKLLLGELESKNMIKEKQHIEDLMARHCFLLLHSNCLQIYYSSFQPHFKEINQVVESLNLMMLQHSNIFIEQDFLLLIQILVLVLLLFPQTTISDLHSEKQALLDFASAFHHGKKVNWNMNTSMCNSWNGVTCNPKGTNVISLRLPGVGLRGSLPPNTIGKLNGLTSLSLRSNTLSGKIPNDILALHSLRFLYLQHNNFSGEFPNFLPPRLVLLDLSHNSFTGQISNSIQNLTNLTGLFLKNNSLIGPIPNVTLPSLKDLDLSFNNLNGSIPLAFHRFQSSSFDGNLMLCGPPLTKQCSSSSPLSSPMLSPLIVSQNSSDVSKKRPILGVVVAAALGGFGLLFLLVLMLVLYFLKKRVGEQNEAPKASKLGENLREDFGSGVQEPEKNKLVFFGGCSYNFDLEDLLRASAEVLGKGSCGTTYKAVLEEGTVVVVKRLKEVAIGKREFEQQMETVQKLDQHPNVVPFSAYYYSKDEKLVVYDYLPFGSFSKLLHGTRETGRTPLDWDTRLKIMLGAAKGVAHIHSASGRKFVHGNIKSCNVLLLGDLQGCISDFGLAPLASFSGSFRSPGYRAPEVIETQKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDPVDLPRWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLSMACVAMVPDTRPSMEEVVRVIEEIIGSYSENQTSLSDKFKGTHDFIPYY 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02139 1328 Pfam Leucine rich repeat N-terminal domain 724 760 IPR013210 -
Adu04g02139 1328 Gene3D Tetratricopeptide repeat domain 460 697 IPR011990 GO:0005515
Adu04g02139 1328 ProSiteProfiles Protein kinase domain profile. 1033 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g02139 1328 SUPERFAMILY Protein kinase-like (PK-like) 1037 1300 IPR011009 -
Adu04g02139 1328 Pfam PPR repeat 381 410 IPR002885 -
Adu04g02139 1328 Pfam PPR repeat 317 341 IPR002885 -
Adu04g02139 1328 Pfam PPR repeat 277 300 IPR002885 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Adu04g02139 1328 SUPERFAMILY L domain-like 740 920 - -
Adu04g02139 1328 Pfam Leucine rich repeat 779 825 IPR001611 GO:0005515
Adu04g02139 1328 PANTHER OS05G0480400 PROTEIN 706 1317 - -
Adu04g02139 1328 Pfam PPR repeat family 412 459 IPR002885 -
Adu04g02139 1328 Gene3D Phosphorylase Kinase; domain 1 1002 1108 - -
Adu04g02139 1328 Pfam Pentacotripeptide-repeat region of PRORP 461 613 IPR033443 -
Adu04g02139 1328 Gene3D Ribonuclease Inhibitor 836 926 IPR032675 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Adu04g02139 1328 Gene3D Ribonuclease Inhibitor 723 835 IPR032675 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Adu04g02139 1328 Gene3D Transferase(Phosphotransferase) domain 1 1110 1324 - -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Adu04g02139 1328 Gene3D Tetratricopeptide repeat domain 228 355 IPR011990 GO:0005515
Adu04g02139 1328 Gene3D Tetratricopeptide repeat domain 356 459 IPR011990 GO:0005515
Adu04g02139 1328 Pfam Protein kinase domain 1037 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 591 622 IPR002885 -
Adu04g02139 1328 TIGRFAM PPR: pentatricopeptide repeat domain 415 449 IPR002885 -
Adu04g02139 1328 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Adu04g02139 1328 PANTHER OS05G0588300 PROTEIN 706 1317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02139 Adu-Chr4 102692823 102702481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02139 709 1316 Receptor kinase-like Gene Family AT5G58300 59.098 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Adu04g02139 Pkinase 9.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02139 - - adu:107485355 1046.19