Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02066 ATGAACAAGGCATTCCGTAGCGATGAAGCAGCATATGAATTTTACAGGAGGTTAGGCAAATGTTTTGGTTTTGGTATTCGAAAGGGTGACTCGGGAAAAGATGACAGTGGAAGGGTTATTCGTCGTAGATTTTTTTGTAATAGAGCGGGCCTGAGAGAACGTCGTCACTATGATAGGCTAGATAGGCAGAGAAGTCATAGACCAGAAACCCGGACAAATTGTGAGGCAAAGTTGTCAGTCTACCTTGATGTGGTCAGTGGGATATGGAGGGTGAGGAAAATTGTATTGGATCATAACCACGATTTAACTCCGGCATATATGGTTCATATGATGACGAATTTTAGAGAAATAACTTGTTCCGCTAAGGCACAAATATTTGGTATGCAGGCTCATGGTGTTCCGACGTCTAAGattctggggacaagttctgtgcagggtttcggacaacgtcccggtgtgaaggcattaacgcatgcatacacacgggagatattCGTCGACGCGAAGAAGGAAATAGTGGGTGTCGGTGCAGTTAATTTTGTAGCCAAGATAAGACGCTCAACTACAATGGTGTACACGTTGGAGGAATATGGTGACCCAGGTAGAGAGGTGATTGTGTTGTACGATAGGGTTTCAAGGAAAATGGAGTGCGCATGCAATTTTTGGAGGCAAAAGGGAATACCTTGTAGACATATGTTTTTTGTAATGAAGCATGAGCACTTGACTCGAATTCCTGAGAGCCTGGTTCTGAAGAGATGGCGAAAGGATGCAAAGTCGTTGGATAAGTATGGTGAGATCACGGAAGTTGGTAGTGAAGTTGGTTTCTTGTTGCGCCATGGTGCACTTCATGCAGCCGCACAGTGGATGCTATATGTTGGAGCCAGGAGCCCTTTATGTTTCACACAGGCGCTTAACGGTCTCCATGCGATGTGTCAAGAACTAGATAGAGGCCCTGAAAGTGGGGGTCAGAGGAAAGCTGTTGATATGGTTGACTTACACGACCCTGTTGTTGCGAAGACTAAGGGTGCCCCTCGTGTGAGGAGGCAGGGCGGACGCAAAAGGCGCTGCACCCGTTGCCGCAAAATGGGTCACACAAAACGACATTGCAATGCCGACCAATCCTTTGTTTCCAAGGCTGGAGAGAGCAAAGATTTTGAGGCTACAAATTTAGGATCGGAGGGGTCTTCACCGACGGAAAGGGTCCGATTCGAACAAGGCAAGAAGGGTGTTACTGGACCCAATAATTTGTGTGCACCAGTTTGGTTGGAGGCATCAGGTTCGAAGATTAGTTTACAACATGAAATTGCTGCTGCAACTGGACATAAGGAGACTATGGAATGGGAGACAAACATGATACGTAACACCGATGAAGTAATAGCACAGCTGATGACTGATGTAACTTATCTCAGTTCAAGATTGGGTTCGAGCTTCGCAGCATAA 1440 0.4326 MNKAFRSDEAAYEFYRRLGKCFGFGIRKGDSGKDDSGRVIRRRFFCNRAGLRERRHYDRLDRQRSHRPETRTNCEAKLSVYLDVVSGIWRVRKIVLDHNHDLTPAYMVHMMTNFREITCSAKAQIFGMQAHGVPTSKILGTSSVQGFGQRPGVKALTHAYTREIFVDAKKEIVGVGAVNFVAKIRRSTTMVYTLEEYGDPGREVIVLYDRVSRKMECACNFWRQKGIPCRHMFFVMKHEHLTRIPESLVLKRWRKDAKSLDKYGEITEVGSEVGFLLRHGALHAAAQWMLYVGARSPLCFTQALNGLHAMCQELDRGPESGGQRKAVDMVDLHDPVVAKTKGAPRVRRQGGRKRRCTRCRKMGHTKRHCNADQSFVSKAGESKDFEATNLGSEGSSPTERVRFEQGKKGVTGPNNLCAPVWLEASGSKISLQHEIAAATGHKETMEWETNMIRNTDEVIAQLMTDVTYLSSRLGSSFAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02066 479 ProSiteProfiles Zinc finger SWIM-type profile. 202 240 IPR007527 GO:0008270
Adu04g02066 479 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 154 265 IPR031052 GO:0006355
Adu04g02066 479 SMART 26again6 215 242 IPR006564 GO:0008270
Adu04g02066 479 Pfam FAR1 DNA-binding domain 13 103 IPR004330 -
Adu04g02066 479 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 154 265 - -
Adu04g02066 479 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 5 118 - -
Adu04g02066 479 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 118 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02066 Adu-Chr4 101006174 101008739 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu04g02066 FAR1 3.6e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02066 - - aip:107613619 584.334