Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02038 ATGGGAAGGGGAAGAGTGCAGTTAAAAAGGATCGAGAACAAGATTAATATGCAAGTAATGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACAAAATCTCAGTGCTATGCGATGCCGAAGCCGCACTCATCGTCTTCTCTACCAAAGGTAGGCTCTTTGAATATTCCAGCGATCCTTGGTTAAATGGCAAATAG 201 0.4229 MGRGRVQLKRIENKINMQVMFSKRRSGLLKKANKISVLCDAEAALIVFSTKGRLFEYSSDPWLNGK 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02038 66 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Adu04g02038 66 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu04g02038 66 Gene3D - 13 64 IPR036879 GO:0003677|GO:0046983
Adu04g02038 66 PANTHER MADS BOX PROTEIN 1 63 - -
Adu04g02038 66 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02038 Adu-Chr4 100161738 100163295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02038 1 60 MADS-box Gene Family AT1G26310 81.667 8.37e-28 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu04g02038 SRF-TF 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02038 K09264 - gmx:100816836 109.768